View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21129_low_4 (Length: 297)
Name: NF21129_low_4
Description: NF21129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21129_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 26666779 - 26666510
Alignment:
| Q |
8 |
agaagaaccaagcaaagtccacaaacagaagctaacctccttgtgcaaaaccagaaaacagagaatgtcaccactcttacctcatcaaccaaatacaaat |
107 |
Q |
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| T |
26666779 |
agaagaaccaagcaaagtccacaaacagaagctaacctccttgtgcaaaaccagaaaacagagaatgtcaccactcttacctcatcaaccaaatacaaat |
26666680 |
T |
|
| Q |
108 |
ctcagagtcatccttagtcactacttctacatcatgttctgcaatggtctacttttgagcttgtgtatgaaaaacataaaaccaatattctgtcacagta |
207 |
Q |
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| T |
26666679 |
ctcagagtcatccttagtcactacttctacatcatgttctgcaatggtctacttttgagcttgtgtatgaaaaacataaaaccaatattctgtcacagta |
26666580 |
T |
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| Q |
208 |
ttgtaacatatattttttaacaatattacacaatttaaacataaagacaagatgtggcagtgatacttca |
277 |
Q |
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| T |
26666579 |
ttgtaacatatttttttttacaatattacacaatttaaacataaagacaagatgtggcagtgatacttca |
26666510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 29301126 - 29301079
Alignment:
| Q |
176 |
gaaaaacataaaaccaatattctgtcacagtattgtaacatatatttt |
223 |
Q |
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| T |
29301126 |
gaaaaacagaaaacaaatattctgtcacagtattgtaacatatatttt |
29301079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 29307788 - 29307741
Alignment:
| Q |
176 |
gaaaaacataaaaccaatattctgtcacagtattgtaacatatatttt |
223 |
Q |
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| T |
29307788 |
gaaaaacagaaaaccaatattctgtcacagcattgtaacatatatttt |
29307741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 29307975 - 29307934
Alignment:
| Q |
138 |
atcatgttctgcaatggtctacttttgagcttgtgtatgaaa |
179 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29307975 |
atcatattctgcaatggtctacttttgagcttgtgtatgaaa |
29307934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 29301311 - 29301274
Alignment:
| Q |
138 |
atcatgttctgcaatggtctacttttgagcttgtgtat |
175 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
29301311 |
atcatattctgcaatggtctacttttgagcttgtgtat |
29301274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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