View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2112_high_1 (Length: 370)
Name: NF2112_high_1
Description: NF2112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2112_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 43288918 - 43288580
Alignment:
| Q |
19 |
catgatgcattataacatattcaaaattagaccgtaagctcaaaaggcatccaaacttagcctcaaacaagtcattatcaaaacagaactcaacaacaca |
118 |
Q |
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| T |
43288918 |
catgatgcattataacatattcaaaattagaccgtaagctcaaaaggcatccaaagttagcctcaaacaagtcattatcaaaacagaactcaacaacaca |
43288819 |
T |
|
| Q |
119 |
ctagtggcatagatgagagctacaaaagcacggttttggaagctcataaaatcactaattttacaaacaaaacatattcaacatgctctcacaatttcaa |
218 |
Q |
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| T |
43288818 |
ctagtggcatagatgagagctacaaaagcacggttttggaagctcatagaatcactaattttacaaaca-----tattcaacatgctctcacaatttcaa |
43288724 |
T |
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| Q |
219 |
cacacaaaatttgagatatgagatttgaatgtgtacctgaccccttgtgcatgatttcaaggggagaaaagtttaaaacttacaaaggtttccatgctct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43288723 |
cacacaaaatttgagatatgagatttgaatgtgtacctgaccccttgtggatgattccaaggggagaaaagtttaaaacttacaaaggtttccatgctct |
43288624 |
T |
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| Q |
319 |
gattctttcataccataattgaaatagacatattagaatattct |
362 |
Q |
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| T |
43288623 |
gattctttcataccataattgaaatagacatattagaatattct |
43288580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 24044122 - 24044197
Alignment:
| Q |
228 |
tttgagatatgagatttgaatgtgtacctgaccccttgtgcatgatttcaaggggagaaaagtttaaaacttacaa |
303 |
Q |
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| T |
24044122 |
tttgagatattaaattagaatgtgtacctgaccccttgtggatgatttcaaagggagacgtgtttaaaacttacaa |
24044197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 10940621 - 10940696
Alignment:
| Q |
228 |
tttgagatatgagatttgaatgtgtacctgaccccttgtgcatgatttcaaggggagaaaagtttaaaacttacaa |
303 |
Q |
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| T |
10940621 |
tttgagatatcaaattagaatgtgtacctgaccccttgtggatgatttcaaagggagacgtgtttaaaacttacaa |
10940696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 10946490 - 10946565
Alignment:
| Q |
228 |
tttgagatatgagatttgaatgtgtacctgaccccttgtgcatgatttcaaggggagaaaagtttaaaacttacaa |
303 |
Q |
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| T |
10946490 |
tttgagatatcaaattagaatgtgtacctgaccccttgtggatgatttcaaagggagacgtgtttaaaacttacaa |
10946565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 49390103 - 49390178
Alignment:
| Q |
228 |
tttgagatatgagatttgaatgtgtacctgaccccttgtgcatgatttcaaggggagaaaagtttaaaacttacaa |
303 |
Q |
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| T |
49390103 |
tttgagatatcaaattagaatgtgtacctgaccccttgtggatgatttcaaagggagacgtgtttaaaacttacaa |
49390178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 13816689 - 13816614
Alignment:
| Q |
228 |
tttgagatatgagatttgaatgtgtacctgaccccttgtgcatgatttcaaggggagaaaagtttaaaacttacaa |
303 |
Q |
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|||||||||| | ||| ||||||||||||||||| ||||| |||||||||| |||||| ||||||||||||||| |
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| T |
13816689 |
tttgagatatcaaattagaatgtgtacctgacccattgtggatgatttcaaagggagacgtgtttaaaacttacaa |
13816614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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