View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2112_high_10 (Length: 218)
Name: NF2112_high_10
Description: NF2112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2112_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 8478489 - 8478289
Alignment:
| Q |
1 |
tccaccgcgtaaagtcgcagtaatcgccggaatcacaggccaagacggatcatacctaacggaattcctcctcaacaaaggctactccgtccacggccta |
100 |
Q |
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| T |
8478489 |
tccaccgcgtaaagtcgcattaatcaccggaatcacaggccaagacggatcatacctaacggaattcctcctcaacaaaggctactccgtccacggccta |
8478390 |
T |
|
| Q |
101 |
attcgccgttcatcaaacttcaacacacaacgaatcgatcacatctatgtcgatccacacaacgctcacaaagctcatatgaagcttcactacgccgatc |
200 |
Q |
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| T |
8478389 |
attcgccgttcttcaaacttcaacacacaacgaatcgatcacatctatgtcgatccacacaacgctcacaaagctcatatgaagcttcactacgccgatc |
8478290 |
T |
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| Q |
201 |
t |
201 |
Q |
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| |
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| T |
8478289 |
t |
8478289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 8486956 - 8486757
Alignment:
| Q |
2 |
ccaccgcgtaaagtcgcagtaatcgccggaatcacaggccaagacggatcatacctaacggaattcctcctcaacaaaggctactccgtccacggcctaa |
101 |
Q |
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|||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8486956 |
ccaccgcggaaagtcgcattaatcaccggaatcacaggccaagacggatcatacctaacagaattcctcctcaacaaaggctactccgtccacggcctaa |
8486857 |
T |
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| Q |
102 |
ttcgccgttcatcaaacttcaacacacaacgaatcgatcacatctatgtcgatccacacaacgctcacaaagctcatatgaagcttcactacgccgatct |
201 |
Q |
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|||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
8486856 |
ttcgtcgttcgtcaaacttcaacacacaacgaattgatcacatctatgtcgatccacacgacgctcacaaagctcatatgaagcttcactatgccgatct |
8486757 |
T |
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