View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2112_low_11 (Length: 237)
Name: NF2112_low_11
Description: NF2112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2112_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 60 - 221
Target Start/End: Original strand, 13083524 - 13083689
Alignment:
| Q |
60 |
catgtgattagaaataaattaataatatttttgtattgatgggt-----gaattcgaaactagacatgatttgttcttcctattgtaatcagatttaatt |
154 |
Q |
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| T |
13083524 |
catgtgattagaa-taaattaataatatttttgtattgatgggtctagtgaattcgaaactagacatgatttgttcttcctattgtaatcagatttaatt |
13083622 |
T |
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| Q |
155 |
aacaatgcgttttgtgaccacttgactattttatttttggtgtttaattttgaacaaattgtgatat |
221 |
Q |
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| T |
13083623 |
aacaatgcgttttgtgaccacttgaccattttatttttggtgtttaattttgaacaaattgtgatat |
13083689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 13083070 - 13083128
Alignment:
| Q |
1 |
tttttcttgcaacattaccaataactaacatttgacataaattgtatcaaatttcataa |
59 |
Q |
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| T |
13083070 |
tttttcttgcaacattaccaataactaacatttgacataaattgtatcaaatttcataa |
13083128 |
T |
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