View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2112_low_3 (Length: 283)
Name: NF2112_low_3
Description: NF2112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2112_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 274261 - 274106
Alignment:
| Q |
1 |
cagagatgacctctatcaaatgttgaatttgtgtggcaacatataagaatgcaaacactgcaaaccaagggtctgtgacctgtaacaccagtaaattaaa |
100 |
Q |
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| T |
274261 |
cagaaatgacctctatcaaatgttgaatttgtgtggcaacatataagaatgcaaacactgcaaaccaagggtctgtgacctgtaacaccagtaaattaaa |
274162 |
T |
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| Q |
101 |
acattgttaaattataaaaccaggacaaaaatttacttactatattaggagtatat |
156 |
Q |
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| T |
274161 |
atattgttaaattataaaaccaggacaaaaatttacttactatattaggagtatat |
274106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 17578166 - 17578234
Alignment:
| Q |
19 |
aatgttgaatttgtgtggcaacatataagaatgcaaacactgcaaaccaagggtctgtgacctgtaaca |
87 |
Q |
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| T |
17578166 |
aatgttgaatttgagtggatacatataataatgtaaacactataaaccaaggttctgtaacctgtaaca |
17578234 |
T |
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