View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2112_low_4 (Length: 279)

Name: NF2112_low_4
Description: NF2112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2112_low_4
NF2112_low_4
[»] chr7 (6 HSPs)
chr7 (86-263)||(25273610-25273787)
chr7 (201-263)||(22964091-22964153)
chr7 (201-263)||(22972335-22972397)
chr7 (1-39)||(25273525-25273563)
chr7 (159-207)||(22964204-22964252)
chr7 (159-207)||(22972448-22972496)
[»] chr1 (1 HSPs)
chr1 (86-252)||(29095722-29095884)
[»] chr8 (3 HSPs)
chr8 (201-262)||(26572201-26572262)
chr8 (201-263)||(12586260-12586322)
chr8 (159-207)||(12586161-12586209)
[»] chr3 (2 HSPs)
chr3 (159-207)||(49601198-49601246)
chr3 (201-263)||(49601297-49601359)
[»] chr2 (2 HSPs)
chr2 (159-207)||(22318988-22319036)
chr2 (207-263)||(22319093-22319149)
[»] chr5 (1 HSPs)
chr5 (7-38)||(3496888-3496919)
[»] chr4 (1 HSPs)
chr4 (111-154)||(6495728-6495771)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 86 - 263
Target Start/End: Original strand, 25273610 - 25273787
Alignment:
Q  86 caatcacaataaaaacatatttctgtatataagtaactaaacaaccatttcgtcattgatcactcatgcttttctcttaaagttgtcgatcaatcaattg 185  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25273610 caatcacaataaaaacatatttctgtatataagtgactaaacaatcatttcgtcattgatcactcatgcttttctcttaaagttgtcgatcaatcacttg 25273709  T
Q  186 atagaacaattaaacttgaaaggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaataatgaaacttc 263  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25273710 atagaacaattgaacttgaaaggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaataatgaaacttc 25273787  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 22964153 - 22964091
Alignment:
Q  201 ttgaaaggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaataatgaaacttc 263  Q
    |||| ||||||||||||||||||  | |||||||||||| ||||| |||||||||||||||||    
T  22964153 ttgataggtatcatccatatttgggatgacaacttcatgatgttcacaaaataatgaaacttc 22964091  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 22972397 - 22972335
Alignment:
Q  201 ttgaaaggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaataatgaaacttc 263  Q
    |||| ||||||||||||||||||  | |||||||||||| ||||| ||||| |||||||||||    
T  22972397 ttgataggtatcatccatatttgggatgacaacttcatgatgttcacaaaacaatgaaacttc 22972335  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25273525 - 25273563
Alignment:
Q  1 gtagtagcggagccaggaattttaactagtggaggcacc 39  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  25273525 gtagtagcggagccaagaattttaactagtggaggcacc 25273563  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 22964252 - 22964204
Alignment:
Q  159 ctcttaaagttgtcgatcaatcaattgatagaacaattaaacttgaaag 207  Q
    ||||| ||||||||||||||||| ||||||||| |||| ||||||||||    
T  22964252 ctcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaag 22964204  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 22972496 - 22972448
Alignment:
Q  159 ctcttaaagttgtcgatcaatcaattgatagaacaattaaacttgaaag 207  Q
    ||||| ||||||||||||||||| ||||||||| |||| ||||||||||    
T  22972496 ctcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaag 22972448  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 252
Target Start/End: Complemental strand, 29095884 - 29095722
Alignment:
Q  86 caatcacaataaaaacatatttctgtatataagtaactaaacaaccatttcgtcattgatcactcatgcttttctcttaaagttgtcgatcaatcaattg 185  Q
    ||||| |||||||||||| ||||| ||| ||||||||||||||   || | ||||||||||||||||||||||||    ||||||||||||||||| |||    
T  29095884 caatctcaataaaaacatctttctctatgtaagtaactaaacagttatatagtcattgatcactcatgcttttct----aagttgtcgatcaatcacttg 29095789  T
Q  186 atagaacaattaaacttgaaaggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaat 252  Q
    ||||||||||| |||||||| |||||||||||||||    |||||||||||||| ||||| ||||||    
T  29095788 atagaacaattgaacttgaatggtatcatccatattcagcacgacaacttcatgatgttcacaaaat 29095722  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 26572201 - 26572262
Alignment:
Q  201 ttgaaaggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaataatgaaactt 262  Q
    |||| |||||||||||||||||| || |||||||||||| ||||| ||||| ||||||||||    
T  26572201 ttgataggtatcatccatatttggaatgacaacttcatgatgttcacaaaacaatgaaactt 26572262  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 12586260 - 12586322
Alignment:
Q  201 ttgaaaggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaataatgaaacttc 263  Q
    |||| ||||||||||||||||||  | |||||||||||| ||||| ||||| |||||||||||    
T  12586260 ttgataggtatcatccatatttgggatgacaacttcatgatgttcacaaaaaaatgaaacttc 12586322  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 12586161 - 12586209
Alignment:
Q  159 ctcttaaagttgtcgatcaatcaattgatagaacaattaaacttgaaag 207  Q
    ||||| ||||||||||||||||| ||||||||| |||| ||||||||||    
T  12586161 ctcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaag 12586209  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 49601198 - 49601246
Alignment:
Q  159 ctcttaaagttgtcgatcaatcaattgatagaacaattaaacttgaaag 207  Q
    ||||| ||||||||||||||||| ||||||||| |||| ||||||||||    
T  49601198 ctcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaag 49601246  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 263
Target Start/End: Original strand, 49601297 - 49601359
Alignment:
Q  201 ttgaaaggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaataatgaaacttc 263  Q
    |||| ||||||||||||||| ||  | |||||||||||| ||||| ||||| |||||||||||    
T  49601297 ttgataggtatcatccatatctgggatgacaacttcatgatgttcacaaaacaatgaaacttc 49601359  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 22318988 - 22319036
Alignment:
Q  159 ctcttaaagttgtcgatcaatcaattgatagaacaattaaacttgaaag 207  Q
    ||||| ||||||||||||||||| ||||||||| |||| ||||||||||    
T  22318988 ctcttcaagttgtcgatcaatcacttgatagaagaattgaacttgaaag 22319036  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 22319093 - 22319149
Alignment:
Q  207 ggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaataatgaaacttc 263  Q
    |||||||||||||||||  | |||||||||||| ||||| ||||| |||||||||||    
T  22319093 ggtatcatccatatttgggatgacaacttcatgatgttcacaaaacaatgaaacttc 22319149  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 3496888 - 3496919
Alignment:
Q  7 gcggagccaggaattttaactagtggaggcac 38  Q
    ||||||||||||||||||||||||||||||||    
T  3496888 gcggagccaggaattttaactagtggaggcac 3496919  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 6495771 - 6495728
Alignment:
Q  111 tatataagtaactaaacaaccatttcgtcattgatcactcatgc 154  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||||    
T  6495771 tatataagtaactaaacaatcatttagtcattgattactcatgc 6495728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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