View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2112_low_5 (Length: 276)
Name: NF2112_low_5
Description: NF2112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2112_low_5 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 273425 - 273177
Alignment:
| Q |
12 |
atgaagcaataagtgaagttgtgaatagcagacattcttgaaaatccataagtaaaagggctatatttagaggcagcaaacaagcaaagttcagacaacc |
111 |
Q |
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| T |
273425 |
atgaagcaataagtgaagttgtgaatagcagacattcttgaaaatccataagtaaaagggctgtatttagagacagcaaacaagcaaagttcagacaacc |
273326 |
T |
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| Q |
112 |
acttcaccaattgaagcatgccttctttgatatcagttggtgcacaccctaagaaacatggtgtttttgggtaaaggtaagctgatttccatcctctgca |
211 |
Q |
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| T |
273325 |
acttcaccaattgaagcatgccttctttgatatcagttggtgcacaccctaagaaacatggtgtttttgggtaaaggtaagctgatttccatcctctgct |
273226 |
T |
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| Q |
212 |
gtgcaaaagatagccagtgatagtactctctagtaagatgccatatgag |
260 |
Q |
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| T |
273225 |
gtgcaaaagatagccagtgatagtactctctagtaagatgccatatgag |
273177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 214
Target Start/End: Original strand, 17579477 - 17579644
Alignment:
| Q |
47 |
tcttgaaaatccataagtaaaagggctatatttagaggcagcaaacaagcaaagttcagacaaccacttcaccaattgaagcatgccttctttgatatca |
146 |
Q |
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| T |
17579477 |
tcttgaaatcccataagtgaatgggctatacttagagattccaagcaagcaaagttcagatgtccactttaccaactgaaggtatccctctttcatgtca |
17579576 |
T |
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| Q |
147 |
gttggtgcacaccctaagaaacatggtgtttttgggtaaaggtaagctgatttccatcctctgcagtg |
214 |
Q |
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| T |
17579577 |
gttggggcacatcctaagaaacatggtctttttggatagagataggttgatctccatcctctacagtg |
17579644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 229
Target Start/End: Original strand, 16381917 - 16382099
Alignment:
| Q |
47 |
tcttgaaaatccataagtaaaagggctatatttagaggcagcaaacaagcaaagttcagacaaccacttcaccaattgaagcatgccttctttgatatca |
146 |
Q |
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| T |
16381917 |
tcttgaaatcccataagtgaatggactatatttagatattgcaaacaacaaaagttcagatacccactttatcaattgactcattccctctttcatgtta |
16382016 |
T |
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| Q |
147 |
gttggtgcacaccctaagaaacatggtgtttttgggtaaaggtaagctgatttccatcctctgcagtgcaaaagatagccagt |
229 |
Q |
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| T |
16382017 |
gttggagcacatcctaagaaacatggtatttttgggtaaagataggttgatctccatcctctgcagtgaaggagatagccagt |
16382099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 17284 - 17178
Alignment:
| Q |
135 |
tctttgatatcagttggtgcacaccctaagaaacatggtgtttttgggtaaaggtaagctgatttccatcctctgcagtgcaaaagatagccagtgatag |
234 |
Q |
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||||| ||||||||||| ||||| |||||||||||||| ||||||||||||| |||| |||| ||||||||||||| || | ||||||||||| | || |
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| T |
17284 |
tctttcatatcagttggagcacatcctaagaaacatggcctttttgggtaaagataagttgatctccatcctctgcaatggaggagatagccagtaacag |
17185 |
T |
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| Q |
235 |
tactctc |
241 |
Q |
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| T |
17184 |
tactctc |
17178 |
T |
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