View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21130_high_1 (Length: 460)
Name: NF21130_high_1
Description: NF21130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21130_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Original strand, 55014219 - 55014649
Alignment:
| Q |
16 |
agagaggaattaaattaataagttgaaatcgcacaaatgtatatatttgacattgttttaatgtaaatgctgatcaatagtaaatgaattgttgttatag |
115 |
Q |
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| T |
55014219 |
agagaggaattaaattaataagttgaaatcgcacaaatgtatatatttgacattgttttaatgtaaatgctgatcaatagtaaatgaattgttgttatag |
55014318 |
T |
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| Q |
116 |
gaagtcctagatggaaatgttgaatctcttgaatcttacaagacctcggcagagagcttcctgtgcacattactacctgaaacatcaagttcacacatag |
215 |
Q |
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| T |
55014319 |
gaagtcctagatggaaatgttgaatctcttgaatcttacaagacctcggcagagagcttcctgtgcacattactacctgaaacatcaagttcacacatcg |
55014418 |
T |
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| Q |
216 |
agtacactcctggtggactcatatacagaccaggtggaagcaacttacaacatgcaacttcaattgctttccttgagttagtctacgccaaatacttatc |
315 |
Q |
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| T |
55014419 |
agtacactcctggtggactcatatacagaccaggtggaagcaacttacaacatgcaacttcaattgctttccttgagttagtctacgccaaatacttatc |
55014518 |
T |
|
| Q |
316 |
ccgcacgtcacaaaccatcaattgtggcaatgtttatgttagtgcacaaacacttcgggagcgcgccaagagacaagttgattacattttaggtgataac |
415 |
Q |
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| T |
55014519 |
ccgcacgtcacaaaccatcaattgtggcaatgtttatgttagtgcacaaacacttcgggagcgcgccaagagacaagttgattacattttaggtgataac |
55014618 |
T |
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| Q |
416 |
cccttgggtttatcttacatggttggttatg |
446 |
Q |
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| T |
55014619 |
cccttgggtttatcttacatggttggttatg |
55014649 |
T |
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