View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21130_low_2 (Length: 355)
Name: NF21130_low_2
Description: NF21130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21130_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 334
Target Start/End: Original strand, 41929361 - 41929688
Alignment:
| Q |
8 |
gacatcatcatacataagcacatgaattcaacattattatctaacaaaatatcttataaaaattatcagctagaacattcacctcttaataatctatcaa |
107 |
Q |
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| T |
41929361 |
gacatcatcatacataagcacatgaattcaacattattatctaataaaatatcttataaaaattatcagctagaacagtcacctcttaataatctatcaa |
41929460 |
T |
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| Q |
108 |
caaaataacttctttaatacaacaaattagaattgtctcactcttgtaagttttagcattaattctacatagcaccggcaattcaaattgaaggtgtgtc |
207 |
Q |
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| T |
41929461 |
caaaataacttctttaatacaacaaattagaattgcctcactctt-taagttttagcattaattctacatagcaccggaaattcaaattgaaggtgtgtc |
41929559 |
T |
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| Q |
208 |
tggtggccggca--acacccatacacatataattacattcaatcactttcattctctcaagataacaatcagactcgaacaattccaaatctcaacgttc |
305 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41929560 |
tggtggccggcacgacactgatacacatataattacattcaatcactttcattctctcaagataacaatcagactcgaacaattccaaatctcaacgttc |
41929659 |
T |
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| Q |
306 |
ttacctcaaatcaaaacactgaaattgag |
334 |
Q |
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| T |
41929660 |
ttacctcaaatcaaaacactgaaattgag |
41929688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 41928402 - 41928435
Alignment:
| Q |
13 |
catcatacataagcacatgaattcaacattatta |
46 |
Q |
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| T |
41928402 |
catcacacataagcacatgaattcaacattatta |
41928435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 258
Target Start/End: Original strand, 28851174 - 28851202
Alignment:
| Q |
230 |
acatataattacattcaatcactttcatt |
258 |
Q |
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| T |
28851174 |
acatataattacattcaatcactttcatt |
28851202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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