View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21130_low_3 (Length: 267)
Name: NF21130_low_3
Description: NF21130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21130_low_3 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 11900723 - 11900989
Alignment:
| Q |
1 |
ggttgacaccttggcaataacaaagggcaatccataataatcaaagtatttagagactgtagcatttccatccccttgggcagataatctaaatttctgc |
100 |
Q |
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| T |
11900723 |
ggttgacaccttggcaataacaaagggcaatccataataatcaaagtatttagagactgtagcatttccatccccttgggcagataatctaaatttctgc |
11900822 |
T |
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| Q |
101 |
attcagaaataactagtttgccaagggaagtgagattacctatgctttctgttaggtcagttagaccatggcaatcataaagccttaaatcatgcaaaga |
200 |
Q |
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| T |
11900823 |
attcagaaataactagtttgccaagggaagtgaggttacctatgctttctgttaggtcagttagaccatggcaatcataaagccttaaatcatgcaaaga |
11900922 |
T |
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| Q |
201 |
gttcaagttttcaatttcccttggaagggacttgagttttggaatactccttaatgtaagagaacga |
267 |
Q |
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| T |
11900923 |
gttcaagttttcaatttcccttggaagggacttgagtttgggaatactccttaatgtaagagaacga |
11900989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 11861795 - 11861529
Alignment:
| Q |
1 |
ggttgacaccttggcaataacaaagggcaatccataataatcaaagtatttagagactgtagcatttccatccccttgggcagataatctaaatttctgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||||| ||||||| ||||||| |
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| T |
11861795 |
ggttgacaccttggcaataacaaagggcaatccataataatcaaagtatttagagactcaagcttttccattcctttgggcagagaatctaactttctgc |
11861696 |
T |
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| Q |
101 |
attcagaaataactagtttgccaagggaagtgagattacctatgctttctgttaggtcagttagaccatggcaatcataaagccttaaatcatgcaaaga |
200 |
Q |
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| T |
11861695 |
attcagaaagaaccagtttttcaagtgaagtgaggttacctatactttctggtaaaaaagttaaaccatgacaatcataaatccttaagtctttcaaagt |
11861596 |
T |
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| Q |
201 |
gttcaagttttcaatttcccttggaagggacttgagttttggaatactccttaatgtaagagaacga |
267 |
Q |
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| T |
11861595 |
gttcacattttcaactccccatggaagggacttaagttttggaatactccttaatgtaagagaacga |
11861529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 11829696 - 11829434
Alignment:
| Q |
1 |
ggttgacaccttggcaataacaaagggcaatccataataatcaaagtatttagagactgtagcatttccatccccttgggcagataatctaaatttctgc |
100 |
Q |
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| T |
11829696 |
ggttgacaccttggcaataacaaagggcaatccataataatcaaagtatttagagactgaagcatttccattcctttgggaagagaatctaaatttctgc |
11829597 |
T |
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| Q |
101 |
attcagaaataactagtttgccaagggaagtgagattacctatgctttctgttaggtcagttagaccatggcaatcataaagccttaaatcatgcaaaga |
200 |
Q |
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||||||||| ||| ||| | |||| |||||||| |||||||| ||||||| || ||||| |||||| |||||||||| ||| || || | ||||| |
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| T |
11829596 |
attcagaaagaaccagtctttcaagtgaagtgaggttacctatactttctggtaaagaagttaaaccatgacaatcataaatcctcaagtctttcaaagt |
11829497 |
T |
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| Q |
201 |
gttcaagttttcaatttcccttggaagggacttgagttttggaatactccttaatgtaagaga |
263 |
Q |
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|||| |||||||| | ||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11829496 |
tttcacgttttcaactccccatggaagggacttcagttttggaatactccttaatgtaagaga |
11829434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 12040590 - 12040324
Alignment:
| Q |
1 |
ggttgacaccttggcaataacaaagggcaatccataataatcaaagtatttagagactgtagcatttccatccccttgggcagataatctaaatttctgc |
100 |
Q |
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| T |
12040590 |
ggttgacaccttggcaataacaacgggcagtccctaataatcaaagtctttagagactgtagcgtttccattcctttgggcagagaatctaactttctgc |
12040491 |
T |
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| Q |
101 |
attcagaaataactagtttgccaagggaagtgagattacctatgctttctgttaggtcagttagaccatggcaatcataaagccttaaatcatgcaaaga |
200 |
Q |
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|||| |||| ||| ||||| |||| |||| || || | ||||||||| | || ||||| ||| |||||||||||||||||||| | || ||||| |
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| T |
12040490 |
attccgaaagaaccagtttttcaagtgaagcgaagttgcatatgctttccgggagagaagttaaaccctggcaatcataaagccttaagacttgtaaaga |
12040391 |
T |
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| Q |
201 |
gttcaagttttcaatttcccttggaagggacttgagttttggaatactccttaatgtaagagaacga |
267 |
Q |
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| T |
12040390 |
gttcacaatctcgaatccctgaggaagggacttgagatttggaatactccttaatgtaagagaacga |
12040324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 11733485 - 11733223
Alignment:
| Q |
1 |
ggttgacaccttggcaataacaaagggcaatccataataatcaaagtatttagagactgtagcatttccatccccttgggcagataatctaaatttctgc |
100 |
Q |
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| T |
11733485 |
ggttgacaccttggcaataacaaggggcagtccataatgatcaaggtaaatagtgacgtgagctttatcattcctttgggcagagaatccatacttctgc |
11733386 |
T |
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| Q |
101 |
attcagaaataactagtttgccaagggaagtgagattacctatgctttctgttaggtcagttagaccatggcaatcataaagccttaaatcatgcaaaga |
200 |
Q |
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| T |
11733385 |
attcagaaagaaccagttcacgaagtgaagtgagattgtctatggtttctggtaaatgagttaaactagggcaatcataaatccttaaatctttcaatga |
11733286 |
T |
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| Q |
201 |
gttcaagttttcaatttcccttggaagggacttgagttttggaatactccttaatgtaagaga |
263 |
Q |
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| T |
11733285 |
tttcaagtttccaaatccgcgtgtaagggtcactagttttggaatactccttaaagtaagaga |
11733223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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