View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21130_low_4 (Length: 267)

Name: NF21130_low_4
Description: NF21130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21130_low_4
NF21130_low_4
[»] chr6 (3 HSPs)
chr6 (1-249)||(20687776-20688022)
chr6 (1-141)||(19067091-19067231)
chr6 (152-249)||(10606581-10606678)
[»] chr4 (2 HSPs)
chr4 (1-249)||(55512215-55512461)
chr4 (158-229)||(56273598-56273669)
[»] chr5 (1 HSPs)
chr5 (1-141)||(32404600-32404740)
[»] chr3 (2 HSPs)
chr3 (1-141)||(7347736-7347876)
chr3 (148-249)||(35431888-35431989)
[»] chr7 (1 HSPs)
chr7 (153-249)||(42343862-42343958)
[»] chr8 (1 HSPs)
chr8 (152-249)||(42638396-42638492)
[»] scaffold0041 (1 HSPs)
scaffold0041 (155-238)||(9365-9448)
[»] chr1 (1 HSPs)
chr1 (155-231)||(15495233-15495307)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 20688022 - 20687776
Alignment:
Q  1 caacaaaaaataataatcaattaagcaacaacattaagatggagaaactaaatggattggactacaacatggagttgtgataaattgtctcaaataacag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20688022 caacaaaaaataataatcaattaagcaacaacattaagatggagaaactaaatggattggactacaacatggagttgtgataaattgtctcaaataacag 20687923  T
Q  101 caagaacaacaacatgatacattaaatctcattcttaaatggggaagagaaaataaatggggaagagatgattgaacctaggaaataaaattacaataca 200  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  20687922 caagaacaa--acatgatacattaaatctcattcttaaatggggaagagaaaataaatggggaagagatgattgaacctaggaaataaaattacagcaca 20687825  T
Q  201 ttttcatactgggttgtgctagatgaaaccaggatctacaatttatgat 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20687824 ttttcatactgggttgtgctagatgaaaccaggatctacaatttatgat 20687776  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 19067231 - 19067091
Alignment:
Q  1 caacaaaaaataataatcaattaagcaacaacattaagatggagaaactaaatggattggactacaacatggagttgtgataaattgtctcaaataacag 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |     
T  19067231 caacaaaaaataataatcgattaagcaacaacattaagatggagaaactaaatggattggacaacaacatggagttgtgacaaattgtctcaaataaaaa 19067132  T
Q  101 caagaacaacaacatgatacattaaatctcattcttaaatg 141  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  19067131 caagaacaacaacacgatacattaaatctcattcttaaatg 19067091  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 10606678 - 10606581
Alignment:
Q  152 aataaatggggaagagatgattgaacctaggaaataaaattacaatacattttcatactgggttgtgctagatgaaaccaggatctacaatttatgat 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || ||||||| ||||||||| | |||||||| ||||||||    
T  10606678 aataaatggggaagagatgattgaacctaggaaataaaattacaacacattttgatattgagttgtgcaagatgaaacaatgatctacagtttatgat 10606581  T

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Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 55512461 - 55512215
Alignment:
Q  1 caacaaaaaataataatcaattaagcaacaacattaagatggagaaactaaatggattggactacaacatggagttgtgataaattgtctcaaataacag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  55512461 caacaaaaaataataatcaattaagcaacaacattaagatggagaaactaaatggattggactacaacatggagttgtgacaaattgtctcaaataacag 55512362  T
Q  101 caagaacaacaacatgatacattaaatctcattcttaaatggggaagagaaaataaatggggaagagatgattgaacctaggaaataaaattacaataca 200  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  55512361 caagaacaa--acatgatacattaaatctcattcttaaatggggaagagaaaataaatggggaagagatgattgaacctaggaaataaaattacagcaca 55512264  T
Q  201 ttttcatactgggttgtgctagatgaaaccaggatctacaatttatgat 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55512263 ttttcatactgggttgtgctagatgaaaccaggatctacaatttatgat 55512215  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 56273669 - 56273598
Alignment:
Q  158 tggggaagagatgattgaacctaggaaataaaattacaatacattttcatactgggttgtgctagatgaaac 229  Q
    |||||| ||||||||||||||||| |||||||||||||| |||||||  |||||| ||| || |||||||||    
T  56273669 tggggaggagatgattgaacctagaaaataaaattacaacacattttgctactggattgagcaagatgaaac 56273598  T

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Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 32404740 - 32404600
Alignment:
Q  1 caacaaaaaataataatcaattaagcaacaacattaagatggagaaactaaatggattggactacaacatggagttgtgataaattgtctcaaataacag 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  32404740 caacaaaaaataataatcgattaagcaacaacattaagatggagaaactaaatggattggacaacaacatggagttgtgacaaattgtctcaaataacag 32404641  T
Q  101 caagaacaacaacatgatacattaaatctcattcttaaatg 141  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  32404640 caagagcaacaacatgatacattaaatctcattcttaaatg 32404600  T

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Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 7347736 - 7347876
Alignment:
Q  1 caacaaaaaataataatcaattaagcaacaacattaagatggagaaactaaatggattggactacaacatggagttgtgataaattgtctcaaataacag 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||    
T  7347736 caacaaaaaataataatcaatcaagcaacaacattaagatggagaaattaaatggattgaacaacaacatggagttgtgacaaattgtctcaaataacag 7347835  T
Q  101 caagaacaacaacatgatacattaaatctcattcttaaatg 141  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  7347836 caagaacaagaacatgatacattaaatctcattcttaaatg 7347876  T

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Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 35431888 - 35431989
Alignment:
Q  148 agaaaataaatggggaagagatgattgaacctaggaaataaaattacaatacattttcatactgggttgtgctagatgaaaccaggatctacaatttatg 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  35431888 agaaaataaatggggaagagatgattgaacctaggaaataaaattacaacacattttcatactgggttgtgctagatgaaaccagaagctacaatttatg 35431987  T
Q  248 at 249  Q
    ||    
T  35431988 at 35431989  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 42343862 - 42343958
Alignment:
Q  153 ataaatggggaagagatgattgaacctaggaaataaaattacaatacattttcatactgggttgtgctagatgaaaccaggatctacaatttatgat 249  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||  |||||| |||||| ||||||||||| ||||||| ||| |||||    
T  42343862 ataaatggggaggagatgattgaacctaggaaataaaattacaacacattttgctactggattgtgcaagatgaaaccaagatctaccattcatgat 42343958  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 249
Target Start/End: Complemental strand, 42638492 - 42638396
Alignment:
Q  152 aataaatggggaagagatgattgaacctaggaaataaaattacaatacattttcatactgggttgtgctagatgaaaccaggatctacaatttatgat 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |  ||||||| ||||||||| | |||||||| ||||||||    
T  42638492 aataaatggggaagagatgattgaacctaggaaataaaattacaa-acattttgatattaagttgtgcaagatgaaacaatgatctacagtttatgat 42638396  T

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Target: scaffold0041 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 9448 - 9365
Alignment:
Q  155 aaatggggaagagatgattgaacctaggaaataaaattacaatacattttcatactgggttgtgctagatgaaaccaggatcta 238  Q
    |||||| || ||||| || |||| |||||||||| || |||| ||||||| ||||||| ||||| ||||||| |||||||||||    
T  9448 aaatggcgaggagataatagaacttaggaaataagataacaacacattttgatactggtttgtgttagatgataccaggatcta 9365  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 15495233 - 15495307
Alignment:
Q  155 aaatggggaagagatgattgaacctaggaaataaaattacaatacattttcatactgggttgtgctagatgaaacca 231  Q
    |||||| |||||||||||||||| || ||||||||| ||||| ||||||| |||  | |||||||||||||| ||||    
T  15495233 aaatggtgaagagatgattgaacttacgaaataaaactacaacacattttgata--gagttgtgctagatgatacca 15495307  T

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