View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21130_low_5 (Length: 230)
Name: NF21130_low_5
Description: NF21130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21130_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 33333172 - 33332974
Alignment:
| Q |
11 |
agaatatttcaacccatttatttagtctaaagccgtagagtgagataatttaataattttaagtataacaaagcaatagaccctttcaaaacctctttaa |
110 |
Q |
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| T |
33333172 |
agaatatttcaacccatttatttagtctaaagccatagagtttgataatttaataattttaagtataacaaagcaatagaccctttcaaaacctctttaa |
33333073 |
T |
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| Q |
111 |
aaagatagaaactttcaaaacccatttgtttattgcaatgtcattactagctataaactttaaatgtgtatttgattcccaaaactggaagttttatat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| |||||| |||||| |
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| T |
33333072 |
aaagatagaaactttcaaaacccatttgtttattgcaatgtcattactagctatgaactttaaaagtgtgtttgattcccaaaacaggaagtattatat |
33332974 |
T |
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