View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21131_low_1 (Length: 803)
Name: NF21131_low_1
Description: NF21131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21131_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 392 - 785
Target Start/End: Original strand, 15466918 - 15467311
Alignment:
| Q |
392 |
agtcaataaaagttgatgcccaaatacattaattttagttgattcaactattttacgcgagtgaatattttagtcatgtataggaaatgaataataaaat |
491 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
15466918 |
agtccataaaagttgatgcccaaatacattaattttagttgattcaactattttacgcgagcgaatattttagtcatgtataggaaatgaataataaaat |
15467017 |
T |
|
| Q |
492 |
gctaagaatttgtacctctccttctaaagctacaaatgtattgacaaacatccaatcagcttgatccaaatttgagaattgactcaatttcattgccata |
591 |
Q |
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| T |
15467018 |
gctaagaatttgtacctctccttctaaagcttcaaatgtattgacaaacatccaatcagcttgatccaaatttgagaattgactcaatttcattgccata |
15467117 |
T |
|
| Q |
592 |
taagcagggtaactttcaggaaaccttataaaacttggaagatctctagaattcaatggaggaagatcaggtacaaccaaaggcaattcatcaacaggaa |
691 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15467118 |
taagcagggtaactttcaggaaaccttataaaacttggaagatctctagaattcaatggaggaagatcaggtacaaccaaaggcaattcatcaacaggaa |
15467217 |
T |
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| Q |
692 |
tttcaatcaaaccatgatgtatacgacaaaaaatgttacaaacagcagctgaattagtgaaaaaagcagcaccataaataccatgttgtttagc |
785 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15467218 |
tttcaatcaaaccatgatgtatacgacaaaaaatgttacaaacagcagctgaattagtgaaaaaagcagcaccataaataccatgttgtttagc |
15467311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 483 - 785
Target Start/End: Original strand, 15474560 - 15474862
Alignment:
| Q |
483 |
taataaaatgctaagaatttgtacctctccttctaaagctacaaatgtattgacaaacatccaatcagcttgatccaaatttgagaattgactcaatttc |
582 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| ||| |
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| T |
15474560 |
taataaaatgctaagaatttgtacctctgcttctaaagcttcaaatgtattgacaaacatccaatcagcttgatttaaattagagaattgattcaacttc |
15474659 |
T |
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| Q |
583 |
attgccatataagcagggtaactttcaggaaaccttataaaacttggaagatctctagaattcaatggaggaagatcaggtacaaccaaaggcaattcat |
682 |
Q |
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| T |
15474660 |
atagccatataagcaggataactttcaggaaaccttataaaacttggaagatctctagaattcaatggaggaagaccaggtacaatcaaaggcaattcat |
15474759 |
T |
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| Q |
683 |
caacaggaatttcaatcaaaccatgatgtatacgacaaaaaatgttacaaacagcagctgaattagtgaaaaaagcagcaccataaataccatgttgttt |
782 |
Q |
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| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| |
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| T |
15474760 |
ctacaggagtttcaatcaaaccatgatgtatacgacagaaaatgttacaaacagcagctgaattggtgaaaaaagcagcaccataaatccgatgttgttt |
15474859 |
T |
|
| Q |
783 |
agc |
785 |
Q |
| |
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||| |
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| T |
15474860 |
agc |
15474862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 223 - 325
Target Start/End: Original strand, 15466749 - 15466851
Alignment:
| Q |
223 |
cgttctgtttttaaacacatttcacttttttggtaaaatacatttgactttacttttgtatattcgtaagactaagtaataaatagtcatgaatattgtg |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15466749 |
cgttctgtttttaaacacatttcacttttttggtaaaatacatttgactttacttttgtatatacgtaagactaagtaataaatagtcatgaatattgtg |
15466848 |
T |
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| Q |
323 |
gag |
325 |
Q |
| |
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||| |
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| T |
15466849 |
gag |
15466851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 15466590 - 15466650
Alignment:
| Q |
66 |
ggaacaagaaaacaatagttgactattattttctcttcttttataagtgtccttttttgtc |
126 |
Q |
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| T |
15466590 |
ggaacaagaaaacaatagttgactattattttctcttcttttataagtgtccttttttgtc |
15466650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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