View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21131_low_10 (Length: 241)
Name: NF21131_low_10
Description: NF21131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21131_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 31548590 - 31548803
Alignment:
| Q |
17 |
aagaacatttttcaattgaaattgatgagaagcacaatcaggatttgtatgaaatactttatttttcccnnnnnnnaaatgttttctattcaatttccac |
116 |
Q |
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| T |
31548590 |
aagaacatttttcaattgaaattgatgagaagcacaatcaggatttgtatgaaatactttatttttccctttttttaaatgttttctattcaatctccat |
31548689 |
T |
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| Q |
117 |
acttagtcccaacatttagtaaatgaactaaaagttaaacagctactaaaatccttt---aaatttgaagtatcttgttgagtgtcttttatgaatatat |
213 |
Q |
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| T |
31548690 |
acttagtcgcaacatttagtaaatgaacaaaaagttaaacagctactaaaatccttttgaaaatttgaactatcttgttgagtgtcttttatgaatatat |
31548789 |
T |
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| Q |
214 |
ggttttcatctgtg |
227 |
Q |
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| T |
31548790 |
ggttttcatctgtg |
31548803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 18229931 - 18230152
Alignment:
| Q |
25 |
ttttcaattgaaattgatgagaagcacaatcaggatttgtatgaaatactttatttttcccnnnnnnnaaatgttttctatt-caatttccacactta-g |
122 |
Q |
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| T |
18229931 |
ttttcaattgagattgctgagaaaaacaatcaggattggtatgaaatactttctttttctcttttgtaaaaa-ttttctatttcaatttccacacttgtg |
18230029 |
T |
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| Q |
123 |
tcccaacatttagtaaatgaactaaaagttaaacagctactaaaatccttt---------------aaatttgaagtatcttgttgagtgtcttttatga |
207 |
Q |
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| T |
18230030 |
ttccaacattgagcaaatgaacttaaagttaaacagcaatcaaaatcattttgtacaaacttttgaaaatttgaagtatcttgttgagtgtctttaatga |
18230129 |
T |
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| Q |
208 |
atatatggttttcatctgtgctc |
230 |
Q |
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||||||||||||||||||||||| |
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| T |
18230130 |
atatatggttttcatctgtgctc |
18230152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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