View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21131_low_4 (Length: 464)
Name: NF21131_low_4
Description: NF21131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21131_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 451
Target Start/End: Complemental strand, 20074160 - 20073733
Alignment:
| Q |
17 |
gaaaagaagtaaatatatgttggcattttccttcccgccttgcgagctgccgatgtaggaacatctgttcaccagaacgcataagttgaatgcagaaaaa |
116 |
Q |
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| T |
20074160 |
gaaaagaagtaaatatatgttggcattttccttcccgccttgcgagctgccgatgtaggaacatctgttcaccagaacgcataagttgaatgccgaaaat |
20074061 |
T |
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| Q |
117 |
tttgatagaataggatcatagtt-atttgattttgttatgttcatttttatatgtatataagaaaataagaacacctttaataagtctccatgccatttt |
215 |
Q |
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| T |
20074060 |
tttgatagaataggatcatagtttatttgattttgttatgttcatttttatatgtatataagaa--------cacctttaataagtctccatgccatttt |
20073969 |
T |
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| Q |
216 |
tcttgaaccataatggaaagtaattctttctaaaatgcgtctagttgtcacaactgtaacctgtgatgattttgaaacaatgttatagtaacaattgtct |
315 |
Q |
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| T |
20073968 |
tcttgaaccataatggaaagtaattctttctaaaatgcgtctagttgtcacaaccgtaacctgtgatgaatttgaaacaatgttatagtaacaattgtct |
20073869 |
T |
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| Q |
316 |
atagaaaaatctgttgaacaatgttatagtaaatattgcatatgccataattttttcttcactaactatggaatacatataataaggcttacctccctga |
415 |
Q |
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| T |
20073868 |
atagaaaaatctgttgaacaatgttattgtaaatattgcatatgccataattttttattcactaactatggaatacatataataaggcttacctccctga |
20073769 |
T |
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| Q |
416 |
caatttggagcactgactttttgaagggaatagtga |
451 |
Q |
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| T |
20073768 |
caatttggagcactgactttttgaaaggaacagtga |
20073733 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 810807 - 810879
Alignment:
| Q |
13 |
cacagaaaagaagtaaatatatgttggcattttccttcccgccttgcgagctgccgatgtaggaacatctgtt |
85 |
Q |
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||||||||||||||||| ||| || ||||| |||||| | |||||||||| || ||| |||||||||||||| |
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| T |
810807 |
cacagaaaagaagtaaacataagtaggcatattccttgcagccttgcgagtagctgatctaggaacatctgtt |
810879 |
T |
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