View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21131_low_8 (Length: 282)
Name: NF21131_low_8
Description: NF21131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21131_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 5553404 - 5553656
Alignment:
| Q |
18 |
tgacactcacttatggatgcatagggaacaagtggcttgtagttgaagctgaaaacttgtgtgacattgttaagatttggatgttgaattgcaagactcc |
117 |
Q |
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| T |
5553404 |
tgacactcacttatggatgcatagggaacaagtggcttgtagttgaagctgaaaacttgtgtgacattgttaagatttggatgttgaattgcaagactcc |
5553503 |
T |
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| Q |
118 |
agagagagtaattcatcctgtaattgaaatttgttaccgcgattttgactcgccaatagtccttatagtttgtcttcacatgccagtgaaccctaattgg |
217 |
Q |
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| T |
5553504 |
agagagagtaattcatcctgtaattgaaatttgttactgcgattttgactcgccaatagtccttatagtttgtcttcacatgccagtgaaccctaattgg |
5553603 |
T |
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| Q |
218 |
gcacatgtgatgagtgcattgcatcaatggttcattgtctttctttggagtat |
270 |
Q |
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| T |
5553604 |
gcacatgtgatgagtgcattgcatcaatggttcattgtctttctttggagtat |
5553656 |
T |
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Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 63 - 270
Target Start/End: Original strand, 5010874 - 5011081
Alignment:
| Q |
63 |
aagctgaaaacttgtgtgacattgttaagatttggatgttgaattgcaagactccagagagagtaattcatcctgtaattgaaatttgttaccgcgattt |
162 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| | |||||| |||| ||||| ||||||| || |||||||||||||| || || || | |
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| T |
5010874 |
aagctgaaaacttgagtgacattgttaagatttggatgttgtacagcaagagtccaaagagaataattcaatctataattgaaatttgtaacagcaatct |
5010973 |
T |
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| Q |
163 |
tgactcgccaatagtccttatagtttgtcttcacatgccagtgaaccctaattgggcacatgtgatgagtgcattgcatcaatggttcattgtctttctt |
262 |
Q |
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| T |
5010974 |
tgactctccaatagtccttatagttagtcttcacatgccagtgtaccctaatggggcacatatgatgggtacactgcagcaatggttcattgtctctctt |
5011073 |
T |
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| Q |
263 |
tggagtat |
270 |
Q |
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| T |
5011074 |
tggagtat |
5011081 |
T |
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