View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21131_low_9 (Length: 244)
Name: NF21131_low_9
Description: NF21131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21131_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 30314345 - 30314118
Alignment:
| Q |
1 |
caatttctatattgtgatatgctgtagagacctctaggcgccgttgcataccacagtttaaaactatgatatgtaattatgtatacatgactgagaatga |
100 |
Q |
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| T |
30314345 |
caatttctatattgtgatatgctgtagagacctctaggcgccgttgcataccacagtttaaaactatgatatgtaattatgtatacatgactgagaatga |
30314246 |
T |
|
| Q |
101 |
tatgagaaaaagtaacaacgccatattacctgaaattgaccgggtctgttaacagggatggcaagatctaatactctaaggtcctggttgtcatctcggt |
200 |
Q |
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| T |
30314245 |
tatgagaaaaagtaacaacgccatattacctgaaattgaccgggtctgttaacagggatggcaagatctaatactctaaggtcctggttgtcatctcggt |
30314146 |
T |
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| Q |
201 |
tagctaaataagcaatgctgccagcagg |
228 |
Q |
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|||| ||||||||||||||||||||||| |
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| T |
30314145 |
tagccaaataagcaatgctgccagcagg |
30314118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 30290779 - 30290560
Alignment:
| Q |
1 |
caatttctatattgtgatatgctgtagagacctctaggcgccgttgcataccacagtttaaaactatgatatgtaattatgtatacatgactgagaatga |
100 |
Q |
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| T |
30290779 |
caatttctatattgtgatatgttgtagaggtctctagatgctgttgcataccgcaatttaaaa-------atgtaat-atgtatacatgactgggagtga |
30290688 |
T |
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| Q |
101 |
tatgagaaaaagtaacaacgccatattacctgaaattgaccgggtctgttaacagggatggcaagatctaatactctaaggtcctggttgtcatctcggt |
200 |
Q |
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| T |
30290687 |
tatgagaaaaagtaacaatgccattttacctgaaattgaccaggcctgttaacggggatggcaagatctaatactctaaggtcctcgttgtcagctcggt |
30290588 |
T |
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| Q |
201 |
tagctaaataagcaatgctgccagcagg |
228 |
Q |
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|||| ||||||||||||||||| ||||| |
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| T |
30290587 |
tagccaaataagcaatgctgccggcagg |
30290560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 100 - 228
Target Start/End: Complemental strand, 30303377 - 30303249
Alignment:
| Q |
100 |
atatgagaaaaagtaacaacgccatattacctgaaattgaccgggtctgttaacagggatggcaagatctaatactctaaggtcctggttgtcatctcgg |
199 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30303377 |
atatgagaaaaagtaacatcgccatattacctgaaattgaccgggtctgttaacagggatggcaagatctaatactctaaggtcctggttgtcatctcgg |
30303278 |
T |
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| Q |
200 |
ttagctaaataagcaatgctgccagcagg |
228 |
Q |
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||||| ||||||||||||||||| ||||| |
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| T |
30303277 |
ttagccaaataagcaatgctgccggcagg |
30303249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 30298282 - 30298065
Alignment:
| Q |
3 |
atttctatattgtgatatgctgtagagacctctaggcgccgttgcataccacagtttaaaactatgatatgtaattatgtatacatgactgagaatgata |
102 |
Q |
| |
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|||| |||||||||||||| ||||||| ||||||| ||| |||||||||| || |||||||| | ||||| | ||||||| || || ||||| |
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| T |
30298282 |
atttttatattgtgatatgttgtagaggcctctagacgctgttgcataccgcaatttaaaaccttaatatgaa--------tacatgattgggagtgata |
30298191 |
T |
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| Q |
103 |
tgagaaaaagtaacaacgccatattacctgaaattgaccgggtctgttaacagggatggcaagatctaatactctaaggtcctggttgtcatctcggtta |
202 |
Q |
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||||||||||||| | |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
30298190 |
tgagaaaaagtaagagtgccatattacctgaaatttaccgggtctgttaacggggatggcaagatctaatactctaagatcctcattgtcatctcggtta |
30298091 |
T |
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| Q |
203 |
gctaaataagcaatgctgccagcagg |
228 |
Q |
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|| ||||||||||||||||| ||||| |
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| T |
30298090 |
gccaaataagcaatgctgccggcagg |
30298065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 30285701 - 30285620
Alignment:
| Q |
123 |
atattacctgaaattgaccgggtctgttaacagggatggcaagatctaatactctaaggtcctggttgtcatctcggttagc |
204 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||| |||||||||||||||||| |
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| T |
30285701 |
atattacctgaaattgaccgggcctgttaacggggatggcaagatctaagactctaagatccttgttgtcatctcggttagc |
30285620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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