View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21132_high_2 (Length: 521)
Name: NF21132_high_2
Description: NF21132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21132_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 17 - 510
Target Start/End: Complemental strand, 40181233 - 40180736
Alignment:
| Q |
17 |
atatgatccaccaaacagcttctatctatcaaaagttgctgctactccatgatgatgatcaagaagaatacaaccaccttcttccttgttatgacgacga |
116 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40181233 |
atatgatccaccaagcagagtctatctatcaaaagttgctgctactccatgatgatgatcaagaagaatacaaccaccttcttccttgttatgacgacga |
40181134 |
T |
|
| Q |
117 |
tgacaaggtcaccacatctgaaagtttccagagaatactgacacgt----ctcagtgacgttcctgttttccgtgactataggtaccaaattaaatcagc |
212 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40181133 |
tgacaaggtcaccacatctgaaagtttccagagagtactgacacgtacgtctcagtgacgttcctgttttccgtgactataggtacaaaattaaatcagc |
40181034 |
T |
|
| Q |
213 |
tatcaaattcatggactttgccactcctcgtcaccatcaacaacattttttactcaaaattattaaaacctcttgtcaaactaaatttgttgaaacacca |
312 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40181033 |
tattgaattcatggactttgccactcctcgtcaccatcaacaacattttttactcaaagttattaaaacctcttgtcaaactaaatttgttgaaacacca |
40180934 |
T |
|
| Q |
313 |
cctcataatcttatccgctttgtagagttggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgtattgtcaatatgcccca |
412 |
Q |
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||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40180933 |
ccttataatcttatccactttgtagaattggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgtattgtcaatatgcccca |
40180834 |
T |
|
| Q |
413 |
ctgctcccactgaatacgatgttgcactaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagaccggtattctt |
510 |
Q |
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| T |
40180833 |
ctgctcccactgaatacgatgttgcactaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagaccggtattctt |
40180736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 38605462 - 38605414
Alignment:
| Q |
247 |
catcaacaacattttttactcaaaattattaaaacctcttgtcaaacta |
295 |
Q |
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||||||| ||||||| |||||||||||||| ||||||| |||||||||| |
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| T |
38605462 |
catcaaccacattttctactcaaaattattgaaacctcctgtcaaacta |
38605414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 46358821 - 46358978
Alignment:
| Q |
247 |
catcaacaacattttttactcaaaattattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtag |
337 |
Q |
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| T |
46358821 |
catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa |
46358920 |
T |
|
| Q |
338 |
agttggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgt |
395 |
Q |
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| T |
46358921 |
agttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgt |
46358978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 500
Target Start/End: Original strand, 46359020 - 46359081
Alignment:
| Q |
439 |
ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac |
500 |
Q |
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| T |
46359020 |
ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac |
46359081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 250 - 408
Target Start/End: Original strand, 44459253 - 44459420
Alignment:
| Q |
250 |
caacaacattttttactcaaaattattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtagagt |
340 |
Q |
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|||||||| ||| ||| ||| ||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| || ||| |
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| T |
44459253 |
caacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagt |
44459352 |
T |
|
| Q |
341 |
tggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgtattgtcaatatgc |
408 |
Q |
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|||||||||||||||| ||| | |||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
44459353 |
tggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgc |
44459420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 250 - 408
Target Start/End: Original strand, 44466786 - 44466953
Alignment:
| Q |
250 |
caacaacattttttactcaaaattattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtagagt |
340 |
Q |
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|
|||||||| ||| ||| ||| ||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||| || ||| |
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| T |
44466786 |
caacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagt |
44466885 |
T |
|
| Q |
341 |
tggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgtattgtcaatatgc |
408 |
Q |
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|||||||||||||||| ||| | |||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
44466886 |
tggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgc |
44466953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 362 - 395
Target Start/End: Original strand, 44460076 - 44460109
Alignment:
| Q |
362 |
atctcatcactacccctgttctggaatcccttgt |
395 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
44460076 |
atctcatcactacccctgttctggaatcccttgt |
44460109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 362 - 395
Target Start/End: Original strand, 44467609 - 44467642
Alignment:
| Q |
362 |
atctcatcactacccctgttctggaatcccttgt |
395 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
44467609 |
atctcatcactacccctgttctggaatcccttgt |
44467642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 500
Target Start/End: Original strand, 44460150 - 44460211
Alignment:
| Q |
439 |
ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac |
500 |
Q |
| |
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|||| |||||| || ||| ||| ||||||| | ||||| ||||||||||||||||||||||| |
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|
| T |
44460150 |
ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac |
44460211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 500
Target Start/End: Original strand, 44467683 - 44467744
Alignment:
| Q |
439 |
ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac |
500 |
Q |
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|||| |||||| || ||| ||| ||||||| | ||||| ||||||||||||||||||||||| |
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| T |
44467683 |
ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac |
44467744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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