View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21132_low_1 (Length: 626)

Name: NF21132_low_1
Description: NF21132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21132_low_1
NF21132_low_1
[»] chr5 (7 HSPs)
chr5 (1-615)||(40180736-40181354)
chr5 (16-164)||(38605675-38605820)
chr5 (5-93)||(40180547-40180635)
chr5 (25-156)||(38604989-38605120)
chr5 (22-84)||(41885930-41885992)
chr5 (352-400)||(38605414-38605462)
chr5 (106-148)||(41885995-41886037)
[»] chr1 (3 HSPs)
chr1 (352-500)||(46358821-46358978)
chr1 (4-164)||(46359143-46359300)
chr1 (544-605)||(46359020-46359081)
[»] chr8 (11 HSPs)
chr8 (355-513)||(44459253-44459420)
chr8 (355-513)||(44466786-44466953)
chr8 (16-161)||(44459583-44459725)
chr8 (16-161)||(44467116-44467258)
chr8 (4-164)||(44460273-44460430)
chr8 (4-164)||(44467806-44467963)
chr8 (25-164)||(34502246-34502382)
chr8 (467-500)||(44460076-44460109)
chr8 (467-500)||(44467609-44467642)
chr8 (544-605)||(44460150-44460211)
chr8 (544-605)||(44467683-44467744)
[»] chr6 (1 HSPs)
chr6 (16-164)||(410919-411068)


Alignment Details
Target: chr5 (Bit Score: 554; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 615
Target Start/End: Complemental strand, 40181354 - 40180736
Alignment:
Q  1 cagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40181354 cagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacatattactatacactgcaagctcttttga 40181255  T
Q  101 ggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgctactccatgatgatgatcaagaagaatacaaccacct 200  Q
    ||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181254 ggagcacaaggtgtagtgctgatatgatccaccaagcagagtctatctatcaaaagttgctgctactccatgatgatgatcaagaagaatacaaccacct 40181155  T
Q  201 tcttccttgttatgacgacgatgacaaggtcaccacatctgaaagtttccagagaatactgacacgt----ctcagtgacgttcctgttttccgtgacta 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    |||||||||||||||||||||||||||||    
T  40181154 tcttccttgttatgacgacgatgacaaggtcaccacatctgaaagtttccagagagtactgacacgtacgtctcagtgacgttcctgttttccgtgacta 40181055  T
Q  297 taggtaccaaattaaatcagctatcaaattcatggactttgccactcctcgtcaccatcaacaacattttttactcaaaattattaaaacctcttgtcaa 396  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40181054 taggtacaaaattaaatcagctattgaattcatggactttgccactcctcgtcaccatcaacaacattttttactcaaagttattaaaacctcttgtcaa 40180955  T
Q  397 actaaatttgttgaaacaccacctcataatcttatccgctttgtagagttggtttggaagaataataagaatctcatcactacccctgttctggaatccc 496  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40180954 actaaatttgttgaaacaccaccttataatcttatccactttgtagaattggtttggaagaataataagaatctcatcactacccctgttctggaatccc 40180855  T
Q  497 ttgtattgtcaatatgccccactgctcccactgaatacgatgttgcactaaagaagaaggatatactttatctgtggaacttgctgaagcatattggcca 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40180854 ttgtattgtcaatatgccccactgctcccactgaatacgatgttgcactaaagaagaaggatatactttatctgtggaacttgctgaagcatattggcca 40180755  T
Q  597 ctatcagaccggtattctt 615  Q
    |||||||||||||||||||    
T  40180754 ctatcagaccggtattctt 40180736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 38605820 - 38605675
Alignment:
Q  16 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgta 115  Q
    |||||||| ||||||||||  ||||| || ||||||||||||||||||||||| || ||||||| |||||| |||||||||||   || ||||| |||||    
T  38605820 gcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagctctttt---gaccacaacgtgta 38605724  T
Q  116 gtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 164  Q
    |||||||||| ||||||||| |  ||||||||| |||||| ||||||||    
T  38605723 gtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 38605675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 40180635 - 40180547
Alignment:
Q  5 aaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagct 93  Q
    |||| ||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||  || |||||||||||||    
T  40180635 aagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 40180547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 156
Target Start/End: Complemental strand, 38605120 - 38604989
Alignment:
Q  25 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 124  Q
    ||||||||||| ||||| || ||||| |||||||| ||||||||| | |||  || ||||||| |||||||||| | ||  ||||| || ||||||||||    
T  38605120 gtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgctgata 38605021  T
Q  125 tgatccaccaaacagcttctatctatcaaaag 156  Q
    || |||| ||| | |||||||||| |||||||    
T  38605020 tgctccagcaagccgcttctatctgtcaaaag 38604989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 41885930 - 41885992
Alignment:
Q  22 gatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactataca 84  Q
    |||||||||||||| ||||| |  |||||||||| ||||||||||||||| ||||||| ||||    
T  41885930 gatgtttttcataaatttgaggcttttcaatgtgagccaaatcaagatacatattactttaca 41885992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 38605462 - 38605414
Alignment:
Q  352 catcaacaacattttttactcaaaattattaaaacctcttgtcaaacta 400  Q
    ||||||| ||||||| |||||||||||||| ||||||| ||||||||||    
T  38605462 catcaaccacattttctactcaaaattattgaaacctcctgtcaaacta 38605414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 41885995 - 41886037
Alignment:
Q  106 acaaggtgtagtgctgatatgatccaccaaacagcttctatct 148  Q
    |||||| |||||| |||||||||||||||||| ||||||||||    
T  41885995 acaaggagtagtgatgatatgatccaccaaactgcttctatct 41886037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 352 - 500
Target Start/End: Original strand, 46358821 - 46358978
Alignment:
Q  352 catcaacaacattttttactcaaaattattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtag 442  Q
    ||||||||||| |||  ||| ||| ||||| ||||||||||||||||||||||||||||| | |||         |||||||||||||||  |||| ||     
T  46358821 catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa 46358920  T
Q  443 agttggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgt 500  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||    
T  46358921 agttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgt 46358978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 46359143 - 46359300
Alignment:
Q  4 caaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgagga 103  Q
    ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |||| ||||||||| ||||||       
T  46359143 caaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgac-- 46359240  T
Q  104 gcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 164  Q
     ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  46359241 -cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 46359300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 605
Target Start/End: Original strand, 46359020 - 46359081
Alignment:
Q  544 ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac 605  Q
    |||| |||||| || ||| ||| ||||||| | ||||| |||||||||||||||||||||||    
T  46359020 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac 46359081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 355 - 513
Target Start/End: Original strand, 44459253 - 44459420
Alignment:
Q  355 caacaacattttttactcaaaattattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtagagt 445  Q
    |||||||| |||  ||| ||| ||||| ||||||||||||||||||||||||||||| | |||         |||||||||||||||  |||| || |||    
T  44459253 caacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagt 44459352  T
Q  446 tggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgtattgtcaatatgc 513  Q
    |||||||||||||||| ||| | |||||||||||||||||||||||||||||||| |  |||||||||    
T  44459353 tggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgc 44459420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 355 - 513
Target Start/End: Original strand, 44466786 - 44466953
Alignment:
Q  355 caacaacattttttactcaaaattattaaaacctcttgtcaaactaaatttgttgaaacacca---------cctcataatcttatccgctttgtagagt 445  Q
    |||||||| |||  ||| ||| ||||| ||||||||||||||||||||||||||||| | |||         |||||||||||||||  |||| || |||    
T  44466786 caacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagt 44466885  T
Q  446 tggtttggaagaataataagaatctcatcactacccctgttctggaatcccttgtattgtcaatatgc 513  Q
    |||||||||||||||| ||| | |||||||||||||||||||||||||||||||| |  |||||||||    
T  44466886 tggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgc 44466953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 44459583 - 44459725
Alignment:
Q  16 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgta 115  Q
    |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| ||||| ||||||| ||| ||||||||||||||   || ||| |  ||||    
T  44459583 gcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacatattactttactctgcaagctctttt---gaccacgacctgta 44459679  T
Q  116 gtgctgatatgatccaccaaacagcttctatctatcaaaagttgct 161  Q
    || || |||||||||| ||| |||||||||||| ||| ||| ||||    
T  44459680 gtactcatatgatccatcaagcagcttctatctgtcagaagatgct 44459725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 44467116 - 44467258
Alignment:
Q  16 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgta 115  Q
    |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| ||||| ||||||| ||| ||||||||||||||   || ||| |  ||||    
T  44467116 gcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacatattactttactctgcaagctctttt---gaccacgacctgta 44467212  T
Q  116 gtgctgatatgatccaccaaacagcttctatctatcaaaagttgct 161  Q
    || || |||||||||| ||| |||||||||||| ||| ||| ||||    
T  44467213 gtactcatatgatccatcaagcagcttctatctgtcagaagatgct 44467258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 44460273 - 44460430
Alignment:
Q  4 caaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgagga 103  Q
    ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |||| ||||||||| ||||||       
T  44460273 caaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgac-- 44460370  T
Q  104 gcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 164  Q
     ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  44460371 -cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44460430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 44467806 - 44467963
Alignment:
Q  4 caaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgagga 103  Q
    ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |||| ||||||||| ||||||       
T  44467806 caaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgac-- 44467903  T
Q  104 gcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 164  Q
     ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  44467904 -cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44467963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 34502382 - 34502246
Alignment:
Q  25 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 124  Q
    ||||||||||| ||||| | ||||||||||||||| |||| |||||| ||   || ||||||| ||||||||||   || |||||| ||||   ||||||    
T  34502382 gtttttcataaatttgaggcatttcaatgtgtgccgaatcgagatacatacacctttacactgaaagctctttt---gatcacaagatgtatcactgata 34502286  T
Q  125 tgatccaccaaacagcttctatctatcaaaagttgctgct 164  Q
    ||| ||||||| | |||||||||| ||||||| |||||||    
T  34502285 tgacccaccaagccgcttctatctgtcaaaagatgctgct 34502246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 500
Target Start/End: Original strand, 44460076 - 44460109
Alignment:
Q  467 atctcatcactacccctgttctggaatcccttgt 500  Q
    ||||||||||||||||||||||||||||||||||    
T  44460076 atctcatcactacccctgttctggaatcccttgt 44460109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 500
Target Start/End: Original strand, 44467609 - 44467642
Alignment:
Q  467 atctcatcactacccctgttctggaatcccttgt 500  Q
    ||||||||||||||||||||||||||||||||||    
T  44467609 atctcatcactacccctgttctggaatcccttgt 44467642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 605
Target Start/End: Original strand, 44460150 - 44460211
Alignment:
Q  544 ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac 605  Q
    |||| |||||| || ||| ||| ||||||| | ||||| |||||||||||||||||||||||    
T  44460150 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac 44460211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 605
Target Start/End: Original strand, 44467683 - 44467744
Alignment:
Q  544 ctaaagaagaaggatatactttatctgtggaacttgctgaagcatattggccactatcagac 605  Q
    |||| |||||| || ||| ||| ||||||| | ||||| |||||||||||||||||||||||    
T  44467683 ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagac 44467744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 410919 - 411068
Alignment:
Q  16 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgta 115  Q
    |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| ||   || |||| || |||||||||| || |  ||||| || |    
T  410919 gcacttgaagtttttcataaatttgaggtatttcaatgtgttccaaatcaagatacatacatctttacattggaagctctttttagaacaacaagttgca 411018  T
Q  116 gtgc-tgatatgatccaccaaacagcttctatctatcaaaagttgctgct 164  Q
    || | | ||||| |||| ||| | |||||||||| ||||||| |||||||    
T  411019 gtactttatatgctccagcaagcggcttctatctgtcaaaagatgctgct 411068  T

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