View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21133_high_1 (Length: 653)

Name: NF21133_high_1
Description: NF21133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21133_high_1
NF21133_high_1
[»] chr1 (1 HSPs)
chr1 (19-647)||(9691428-9692055)


Alignment Details
Target: chr1 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 19 - 647
Target Start/End: Original strand, 9691428 - 9692055
Alignment:
Q  19 ctgccagtctcattgcaagaacaagtctactctgttccagacgtgcaatcgcagcatctctctcaacacgctgctgagtctgaatggtctacatatcata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9691428 ctgccagtctcattgcaagaacaagtctactctgttccagacgtgcaatcgcagcatctctctcaacacgctgctgagtctgaatggtctacatatcata 9691527  T
Q  119 cagataggaattctaatttagaacaaaaccatattnnnnnnnncaaacaagaagtggccaaaaagtcatggtaaaaatattaagcatgcgattaactgat 218  Q
    |||| ||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9691528 cagaaaggaattctaatttagaacaaaaccatattaaaaaaa-caaacaagaagtggccaaaaagtcatggtaaaaatattaagcatgcgattaactgat 9691626  T
Q  219 tggaaaaccttctcaagttccagaaaaaacaatgaatattgcatatatacattgtcggctcattttatgaattaaatatcttattcttcacatcaaccaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9691627 tggaaaaccttctcaagttccagaaaaaacaatgaatattgcatatatacattgtcggctcattttatgaattaaatatcttattcttcacatcaaccaa 9691726  T
Q  319 ataagaatcctttacattaactcattaaaccatacttacccctgttatacaaacttgccgttccatggaacattagttctattgattatctactactgaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9691727 ataagaatcctttacattaactcattaaaccatacttacccctgttatacaaacttgccgttccatggaacattagttctattgattatctactactgaa 9691826  T
Q  419 attgggtaatcctttatgaataagagagctctatctcatccagaccgttaaagaattagggttatttatgtgatacaagtgatgtcaaacttgttttgtt 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9691827 attgggtaatcctttatgaataagagagctctatctcatccagaccgttaaagaattagggttatttatgtgatacaagtgatgtcaaacttgttttgtt 9691926  T
Q  519 agaagtattaatgggtataagaatatttggcttatacatgttaattttgtaacaatagtatttctcattgatctggaattgtactacactgctacttgac 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9691927 agaagtattaatgggtataagaatatttggcttatacatgttaattttgtaacaatagtatttctcattgatctggaattgtactacactgctacttgac 9692026  T
Q  619 ttctattatcagtataatttggagtatta 647  Q
    |||||||||||||||||||||||||||||    
T  9692027 ttctattatcagtataatttggagtatta 9692055  T

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