View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21133_high_2 (Length: 301)
Name: NF21133_high_2
Description: NF21133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21133_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 10 - 282
Target Start/End: Complemental strand, 55848421 - 55848149
Alignment:
| Q |
10 |
agaagcaaaggaagaatagatatannnnnnnggtaacatttgcttgcaactgtgtttaaatcgactcgttgaacatacctgtagctactatataatattg |
109 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55848421 |
agaagaaaaggaagaatagatatatttttttggtaacatttgcttgcaactgtgtttaaatcgactcgttgaacatacctgtagctactatataatattg |
55848322 |
T |
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| Q |
110 |
gtgcgacaaatgagtgtaagcaaacattgcatcatctgnnnnnnnnnnnnnnnnnnnnngtggaaaagagcctaaatcactagttacctttcaaattggc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
55848321 |
gtgcgacaaatgagtgtaagcaaacattgcatcatctgttttttttttctttcttttttgtggaaaagagcctaaatcactagttacctttcaaattggc |
55848222 |
T |
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| Q |
210 |
tggnnnnnnnntgatagcgagtcatttcctatgtcctacttacataactggtacctaccttctttatgtgaaa |
282 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55848221 |
tggaaaaaaaatgatagcgagtcatttcctatgtcctacttacataactggtacctaccttctttatgtgaaa |
55848149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 10 - 282
Target Start/End: Complemental strand, 55784239 - 55783967
Alignment:
| Q |
10 |
agaagcaaaggaagaatagatatannnnnnnggtaacatttgcttgcaactgtgtttaaatcgactcgttgaacatacctgtagctactatataatattg |
109 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55784239 |
agaagaaaaggaagaatagatatatttttttggtaacatttgcttgcaactgtgtttaaatcgactcgttgaacatacctgtagctactatataatattg |
55784140 |
T |
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| Q |
110 |
gtgcgacaaatgagtgtaagcaaacattgcatcatctgnnnnnnnnnnnnnnnnnnnnngtggaaaagagcctaaatcactagttacctttcaaattggc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
55784139 |
gtgcgacaaatgagtgtaagcaaacattgcatcatctgtgttttttttctttcttttttgtggaaaagagcctaaatcactagttacctttcaaattgtc |
55784040 |
T |
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| Q |
210 |
tggnnnnnnnntgatagcgagtcatttcctatgtcctacttacataactggtacctaccttctttatgtgaaa |
282 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55784039 |
tggaaaaaaaatgatagcgagtcatttcctatgtcctacttacataactggtacctaccttctttatgtgaaa |
55783967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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