View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21133_low_2 (Length: 487)
Name: NF21133_low_2
Description: NF21133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21133_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 11 - 469
Target Start/End: Complemental strand, 40607114 - 40606656
Alignment:
| Q |
11 |
catcatcattcaccaactcttctgtaaacatcaattgtactctctaccatctttttgacgaatttaaatttgtcacctaataaaatgtgttggactatcg |
110 |
Q |
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| T |
40607114 |
catcatcattcaccaactcttctgtaaacatcaattgtactctctaccatctttttgacgaatttaaatttgtcacctaataaaatgtgttggactatcg |
40607015 |
T |
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| Q |
111 |
tcgttattcattctaataaacttgtttttacttctttnnnnnnntagtaccagaacttcttaccacatggctaatgatgagccctgctgtgggcctttgc |
210 |
Q |
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| T |
40607014 |
tcgttattcattctaataaacttgtttttacttctttaaaaaaatagtaccagaacttcataccacatggctaatgatgagccctgctgtgggcctttgc |
40606915 |
T |
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| Q |
211 |
aatagactctcggcattaatttagagggctccaggtttagaaaccttgctgatttaagacacaacaattatgagacacaataaaatgtaatttgctcaaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40606914 |
aatagactctcggcattaatttagagggctccaggtttagaaaccttgctgatttaagacacaacaattatgagacacaataaaatgtaatttgctcaaa |
40606815 |
T |
|
| Q |
311 |
cgcttcccagcacgtgattctttttacccgatatgtcttaatttcgtgtcctatcctgcgaccctgatgctgcataattcatatttaatgactctcagaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40606814 |
cgcttcccagcacgtgattctttttacccgatatgtcttaatttcgtgtcctatcctgcgaccctgatgctgcataattcatatttaatgactctcagaa |
40606715 |
T |
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| Q |
411 |
agatttatggtgctaatagtacacaaacagttggaaatggttggaaaacgagtcgagct |
469 |
Q |
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| T |
40606714 |
agatttatggtgctaatagtacacaaacagttggaaatggttggaaaacgggtcgagct |
40606656 |
T |
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