View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21134_high_10 (Length: 413)
Name: NF21134_high_10
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 9 - 393
Target Start/End: Original strand, 45141559 - 45141943
Alignment:
| Q |
9 |
gagatgaaaaacaagttgaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141559 |
gagatgaaaaacaagttgaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggtatgtc |
45141658 |
T |
|
| Q |
109 |
tagcagcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45141659 |
tagcagcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatg |
45141758 |
T |
|
| Q |
209 |
gtggagagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaacatggtc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |
|
|
| T |
45141759 |
gtggagagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctggaaatcgtggccatgattatgttacatccaaacatggtc |
45141858 |
T |
|
| Q |
309 |
tcttaggacttgtacgttcaacgtgcggtgagcttggagcttacggaattagagtcaattcaatctcaccgaatggtgttgccac |
393 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45141859 |
tcttaggacttgtacgttcaacgtgtggtgagcttggagcttacggaattagagtcaattcaatctcaccgtatggtgttgccac |
45141943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 11 - 393
Target Start/End: Original strand, 45152204 - 45152588
Alignment:
| Q |
11 |
gatgaaaaacaagttgaagaaacagtagctttcgcattggaaaaatatggaaccctagacattatgtttagcaacgctggaattgaaggtggta------ |
104 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||| ||||| ||||| |||||||||| ||||| || |
|
|
| T |
45152204 |
gatgaaaaacaagttgaggaaaccgtagcttttgcattggaaaaatatggaaccttagacatcatgttcagcaatgctggaattggaggtgctactgcta |
45152303 |
T |
|
| Q |
105 |
tgtctagcagcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgttt |
204 |
Q |
| |
|
|||||| |||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| | |
|
|
| T |
45152304 |
tgtctatcagcatactaa----tgatgtaaatgaatttgacaacaccatggccattaatgttcgtggatcagctacaactatcaagcacgctgcgcgtgt |
45152399 |
T |
|
| Q |
205 |
catggtggagagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaacat |
304 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| || || ||||| |||| || ||||||||| | | || ||||||||| | ||||||||| |
|
|
| T |
45152400 |
tatggtggaaagaaaaattcgtggatccataatttgcacggctagtgtggctggctttgttgctggatgtgcaggacatgattatacaacatccaaacat |
45152499 |
T |
|
| Q |
305 |
ggtctcttaggacttgtacgttcaacgtgcggtgagcttggagcttacggaattagagtcaattcaatctcaccgaatggtgttgccac |
393 |
Q |
| |
|
||||| |||| ||||| || ||||||||| |||||||||||||||| ||||| ||||| |||||||| ||||| |||||||||||| |
|
|
| T |
45152500 |
ggtcttataggccttgttcgctcaacgtgcagtgagcttggagcttatggaataagagttaattcaatttcaccttctggtgttgccac |
45152588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 113 - 378
Target Start/End: Original strand, 38256127 - 38256392
Alignment:
| Q |
113 |
agcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtgg |
212 |
Q |
| |
|
||||||||||||||| | || ||||||||||||||||||||||| | || ||||||| || ||| |||||||||| ||| ||||| | ||||||| |
|
|
| T |
38256127 |
agcatactagaatttaacctaaatgaatttgacaacaccatggctgtgaacattcgtggtgcagctgcaactatcaagcatgcttcacgtgtaatggtgg |
38256226 |
T |
|
| Q |
213 |
agagaaaaatccgtggatccataatttgtactgccagtgtagctgcctctgttgctggttatcgtggccatgattatgtttcgtccaaacatggtctctt |
312 |
Q |
| |
|
| |||||||| || ||||| |||||||| || ||||||||||||| | ||||| | | | | || ||||||||| | || ||||||||||| | |
|
|
| T |
38256227 |
aaagaaaaatacgaggatcaataatttgcacagccagtgtagctggttttgttggtagatgtgcaggacatgattatacagcatcaaaacatggtcttat |
38256326 |
T |
|
| Q |
313 |
aggacttgtacgttcaacgtgcggtgagcttggagcttacggaattagagtcaattcaatctcacc |
378 |
Q |
| |
|
||| ||||| | ||| | |||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
38256327 |
aggccttgttaggtcagcatgcggtgagcttggagcttatggaatcagagtcaattcaatctcacc |
38256392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University