View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21134_high_12 (Length: 389)

Name: NF21134_high_12
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21134_high_12
NF21134_high_12
[»] chr4 (7 HSPs)
chr4 (104-278)||(5237184-5237358)
chr4 (104-278)||(10635966-10636140)
chr4 (104-216)||(5241954-5242066)
chr4 (104-218)||(10655351-10655465)
chr4 (104-218)||(10869496-10869610)
chr4 (343-381)||(5237418-5237456)
chr4 (343-381)||(10636200-10636238)
[»] chr6 (3 HSPs)
chr6 (104-278)||(14812646-14812816)
chr6 (104-213)||(14817412-14817521)
chr6 (343-381)||(14812876-14812914)
[»] chr1 (3 HSPs)
chr1 (105-278)||(2357577-2357749)
chr1 (105-185)||(2362172-2362252)
chr1 (343-381)||(2357808-2357846)
[»] chr8 (4 HSPs)
chr8 (144-275)||(187582-187712)
chr8 (104-216)||(620996-621108)
chr8 (104-209)||(614603-614708)
chr8 (343-380)||(187766-187803)
[»] scaffold0209 (1 HSPs)
scaffold0209 (104-209)||(27387-27492)
[»] chr2 (1 HSPs)
chr2 (118-275)||(8309262-8309419)
[»] chr7 (2 HSPs)
chr7 (230-278)||(14579653-14579701)
chr7 (214-278)||(15996707-15996771)
[»] chr5 (1 HSPs)
chr5 (214-278)||(9279857-9279921)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 104 - 278
Target Start/End: Original strand, 5237184 - 5237358
Alignment:
Q  104 tagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttctt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5237184 tagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttctt 5237283  T
Q  204 ttgatttctgatatggtatcagaagatcttttcaaagaggaagagtttgttacgatccattacggtttgtaaccg 278  Q
    |  |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5237284 tgtatttctgatatggtatcagaagctctttccaaagaggaagagtttgttacgatccattacggtttgtaaccg 5237358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 104 - 278
Target Start/End: Original strand, 10635966 - 10636140
Alignment:
Q  104 tagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttctt 203  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  10635966 tagttagatcattatagcttaccatactattagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatttcattccttttctt 10636065  T
Q  204 ttgatttctgatatggtatcagaagatcttttcaaagaggaagagtttgttacgatccattacggtttgtaaccg 278  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  10636066 ttgatttctgatatggtatcagaagctctttccaaagaggaagagtttgttacgatccataacggtttgtaaccg 10636140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 5241954 - 5242066
Alignment:
Q  104 tagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttctt 203  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5241954 tagttagatcattgtagcttacaatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttctt 5242053  T
Q  204 ttgatttctgata 216  Q
    |||||||||||||    
T  5242054 ttgatttctgata 5242066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 10655351 - 10655465
Alignment:
Q  104 tagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttctt 203  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  10655351 tagttagatcattatagcttaccatactactagttattagtatatatacttattgtaagctctattcttagtaatgagaattcatttcattccttttctt 10655450  T
Q  204 ttgatttctgatatg 218  Q
    |||||||||||||||    
T  10655451 ttgatttctgatatg 10655465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 10869496 - 10869610
Alignment:
Q  104 tagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttctt 203  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  10869496 tagttagatcattatagcttaccatactactagttattagtatatatacttattgtaagctctattcttagtaatgagaattcatttcattccttttctt 10869595  T
Q  204 ttgatttctgatatg 218  Q
    |||||||||||||||    
T  10869596 ttgatttctgatatg 10869610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 5237418 - 5237456
Alignment:
Q  343 gtgtgttaaatcttcacgatttcacaccttgattcttct 381  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  5237418 gtgtgttaaatcttcacgatttcacaccttgagtcttct 5237456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 10636200 - 10636238
Alignment:
Q  343 gtgtgttaaatcttcacgatttcacaccttgattcttct 381  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  10636200 gtgtgataaatcttcacgatttcacaccttgattcttct 10636238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 104 - 278
Target Start/End: Original strand, 14812646 - 14812816
Alignment:
Q  104 tagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttctt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||    
T  14812646 tagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcata----tccctttctt 14812741  T
Q  204 ttgatttctgatatggtatcagaagatcttttcaaagaggaagagtttgttacgatccattacggtttgtaaccg 278  Q
    |||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14812742 ttgatttctgttatggtatcagaagctctttccaaagaggaagagtttgttacgatccattacggtttgtaaccg 14812816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 104 - 213
Target Start/End: Original strand, 14817412 - 14817521
Alignment:
Q  104 tagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttctt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14817412 tagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttctt 14817511  T
Q  204 ttgatttctg 213  Q
    ||||||||||    
T  14817512 ttgatttctg 14817521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 14812876 - 14812914
Alignment:
Q  343 gtgtgttaaatcttcacgatttcacaccttgattcttct 381  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14812876 gtgtgttaaatcttcacgatttcacaccttgattcttct 14812914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 7e-65; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 105 - 278
Target Start/End: Original strand, 2357577 - 2357749
Alignment:
Q  105 agttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttt 204  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||  || |||     
T  2357577 agttagatcattatagcttaccatacttctagttattagtatatatacttgttgtaagctctattctttgtaatgagaatt-ttatcattcatttccttc 2357675  T
Q  205 tgatttctgatatggtatcagaagatcttttcaaagaggaagagtttgttacgatccattacggtttgtaaccg 278  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2357676 tgatttctgatatggtatcagaagctctttccaaagaggaagagtttgttacgatccattacggtttgtaaccg 2357749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 2362172 - 2362252
Alignment:
Q  105 agttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaatt 185  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2362172 agttagatcattatagcttaccatacttctagttattagtatatatacttgttgtaagctctattctttgtaatgagaatt 2362252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 2357808 - 2357846
Alignment:
Q  343 gtgtgttaaatcttcacgatttcacaccttgattcttct 381  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  2357808 gtgtgttaaatcttcatgatttcacaccttgattcttct 2357846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 144 - 275
Target Start/End: Original strand, 187582 - 187712
Alignment:
Q  144 tatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttttgatttctgatatggtatcagaagatcttttcaaagagg 243  Q
    |||||||||| ||||||||||||||||| |||||||| ||||||| ||||||| |||| |||||||| ||||||||||||||||| ||||||||||||||    
T  187582 tatatatact-gttgtaagctctattctaagtaatgataattcatttcattccttttcctttgatttttgatatggtatcagaagctcttttcaaagagg 187680  T
Q  244 aagagtttgttacgatccattacggtttgtaa 275  Q
    ||  |||||||||||||||| |||||||||||    
T  187681 aaaggtttgttacgatccataacggtttgtaa 187712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 104 - 216
Target Start/End: Original strand, 620996 - 621108
Alignment:
Q  104 tagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttctt 203  Q
    ||||||||||||| |||||||||||||  || |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||| |    
T  620996 tagttagatcattatagcttaccatacatcttgttattagtatatatacttgttgtaagctctattctaagtaatgagaattcatttcattccttttcct 621095  T
Q  204 ttgatttctgata 216  Q
    |||||| ||||||    
T  621096 ttgattcctgata 621108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 614603 - 614708
Alignment:
Q  104 tagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttctt 203  Q
    ||||||||||||| |||||||||||||  || |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||| |    
T  614603 tagttagatcattatagcttaccatacatcttgttattagtatatatacttgttgtaagctctattctaagtaatgagaattcatttcattccttttcct 614702  T
Q  204 ttgatt 209  Q
    ||||||    
T  614703 ttgatt 614708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 380
Target Start/End: Original strand, 187766 - 187803
Alignment:
Q  343 gtgtgttaaatcttcacgatttcacaccttgattcttc 380  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  187766 gtgtgttaactcttcacgatttcacaccttgattcttc 187803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 27387 - 27492
Alignment:
Q  104 tagttagatcattgtagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttctt 203  Q
    ||||||||||||| |||||||||||||  || |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||| |    
T  27387 tagttagatcattatagcttaccatacatcttgttattagtatatatacttgttgtaagctctattctaagtaatgagaattcatttcattccttttcct 27486  T
Q  204 ttgatt 209  Q
    ||||||    
T  27487 ttgatt 27492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 118 - 275
Target Start/End: Original strand, 8309262 - 8309419
Alignment:
Q  118 tagcttaccatactactagttattagtatatatacttgttgtaagctctattcttagtaatgagaattcatatcattccctttcttttgatttctgatat 217  Q
    ||||||| |||||  |||| || ||||||||||||  ||||||||||||  | | | |||| | |||||||   ||||  |||| |||| || || ||||    
T  8309262 tagcttatcatacatctagataatagtatatatacaagttgtaagctctcatttcaataataacaattcattctattcattttcctttgtttcctaatat 8309361  T
Q  218 ggtatcagaagatcttttcaaagaggaagagtttgttacgatccattacggtttgtaa 275  Q
    |||||||  || ||||| |||||||||||||||||||||||||||| |||||||||||    
T  8309362 ggtatcacgagctctttccaaagaggaagagtttgttacgatccataacggtttgtaa 8309419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 14579653 - 14579701
Alignment:
Q  230 tcttttcaaagaggaagagtttgttacgatccattacggtttgtaaccg 278  Q
    ||||| |||||||||||||||||||||||||||| || |||||||||||    
T  14579653 tctttccaaagaggaagagtttgttacgatccataacagtttgtaaccg 14579701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 15996707 - 15996771
Alignment:
Q  214 atatggtatcagaagatcttttcaaagaggaagagtttgttacgatccattacggtttgtaaccg 278  Q
    |||||||||||  || ||||| |||||||||||||||||||| ||||||| || |||||||||||    
T  15996707 atatggtatcatgagctctttccaaagaggaagagtttgttatgatccataacagtttgtaaccg 15996771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 9279857 - 9279921
Alignment:
Q  214 atatggtatcagaagatcttttcaaagaggaagagtttgttacgatccattacggtttgtaaccg 278  Q
    |||||||||||  || ||||| |||||||||||||||||||| ||||||| ||||| ||||||||    
T  9279857 atatggtatcaagagctctttccaaagaggaagagtttgttatgatccataacggtctgtaaccg 9279921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University