View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21134_high_15 (Length: 370)
Name: NF21134_high_15
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 4 - 351
Target Start/End: Complemental strand, 1778798 - 1778451
Alignment:
| Q |
4 |
atgaagcttataattttgaggcatggaaactcaaattcactgacttttataaggaactcaaaatcatgtgnnnnnnnnncacattctgccttgtttcaaa |
103 |
Q |
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| T |
1778798 |
atgaagcttataatttcgaggcatggaaactcaaattcactgacttttctaaggaactcaaaatcaggtgaaaaaaaaacacattctaccttgtttcaaa |
1778699 |
T |
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| Q |
104 |
aagaagaatactaatacattacttgaatgaaaattttcaacttttgcagcagaattgtcacaacaaaatatttatattaatcaaaacaaaacctcggtat |
203 |
Q |
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| T |
1778698 |
aagaagaatactaatgcattacttgaatgaaaaatttcaacttttgcagcagaattgccgcaacaaaatactgatattaatcaaaacaaaaccccagtat |
1778599 |
T |
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| Q |
204 |
gctcaaaagaattcaaagaagagaatagttgaaaaatattgtagacttgatattacaaaatcaaagaacaatcatgctacatcaaaacacgataaaagaa |
303 |
Q |
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| T |
1778598 |
gctcaagagaattcaaagaagagaatagttgaaaaatattgtagacttgatattacaaaatcaaagaacaatcatgctacatcaaaacacaataaaagaa |
1778499 |
T |
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| Q |
304 |
aaagtcaaatcggataaaataatggttaatatctttttcaatgttaat |
351 |
Q |
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| T |
1778498 |
aaagtcaaatcggataaaataatggttaatatctttctcaatgttaat |
1778451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 83 - 272
Target Start/End: Original strand, 21237996 - 21238193
Alignment:
| Q |
83 |
cacattctgccttgtttcaaaaagaagaatactaatacattacttgaatgaaaattttcaacttttgcagcagaattgtcacaacaaaatatttatatta |
182 |
Q |
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| T |
21237996 |
cacattctaccttgtgtgaagaagaaaagtactactacactagttgaaagaaaagtttcagcttctgcagtagaatcgtcacaacaaaatattgatacaa |
21238095 |
T |
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| Q |
183 |
atcaaaacaaaacctcggtatgctcaaaag--------aattcaaagaagagaatagttgaaaaatattgtagacttgatattacaaaatcaaagaac |
272 |
Q |
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| T |
21238096 |
atcaaaacaaaacatcaacatgctcaagagattctgcaaattcaaagaagagaagagttgaaaaatgttgtaaactggatattaccaaatcaaagaac |
21238193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 271
Target Start/End: Complemental strand, 8722823 - 8722696
Alignment:
| Q |
149 |
gcagcagaattgtcacaacaaaatatttatattaatcaaaacaaaacctcggtatgctcaaaaga--attcaaa---gaagagaatagttgaaaaatatt |
243 |
Q |
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| T |
8722823 |
gcagcagaatcgtcacaacaaaatattgatacaaatcaaaacaaaacatcaacatgctcaagagattctgcaaattcaaagagaagagttgaaaaatgtt |
8722724 |
T |
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| Q |
244 |
gtagacttgatattacaaaatcaaagaa |
271 |
Q |
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| T |
8722723 |
gcaaacttgatattaccaaatcaaagaa |
8722696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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