View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21134_high_16 (Length: 360)
Name: NF21134_high_16
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 355
Target Start/End: Complemental strand, 2012787 - 2012449
Alignment:
| Q |
17 |
tatacacgtcctcagttattgtcctatatgtatctaacaattataaggtagtgttgactatagggtgaaattctcaatattgtgttaggtagaagttgtg |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2012787 |
tatacacgtcctcagttattgtcctatatgtatctaacaattataaggtagtgttgactatagggtgaaattctcaatattgtgttaggtagaagttgtg |
2012688 |
T |
|
| Q |
117 |
aaatgcagatatactggtgcataccaaaatatcttaaaaccaaactttcaaccatgaacttggctttaaaatctatacaagtctttggctaggtgagttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2012687 |
aaatgcagatatactggtgcataccaaaatatcttaaaaccaaactttcaaccatgaacttggctttaaaatctatacaagtctttggctaggtgagttt |
2012588 |
T |
|
| Q |
217 |
cattcatgaaattggcctcaaatttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctc |
316 |
Q |
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|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2012587 |
cattcatgaacttggcctcaaatttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcatttctc |
2012488 |
T |
|
| Q |
317 |
aaagttacttatccagcttcatccggacattcatctcac |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
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| T |
2012487 |
aaagttacttatccagcttcatccggacattcatgtcac |
2012449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 239 - 340
Target Start/End: Complemental strand, 2019347 - 2019246
Alignment:
| Q |
239 |
tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcat |
338 |
Q |
| |
|
||||||||| |||||| |||| ||||| |||||||||||||| || ||||| |||||| |||| |||||||||||||| ||| ||||| | ||||||||| |
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| T |
2019347 |
tttcatggagaaaacagttcatattgcagttgttccaggtgttggatatggccacttattcccgattcttcaattctccaagctacttgttcagcttcat |
2019248 |
T |
|
| Q |
339 |
cc |
340 |
Q |
| |
|
|| |
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|
| T |
2019247 |
cc |
2019246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 223 - 355
Target Start/End: Original strand, 1968048 - 1968181
Alignment:
| Q |
223 |
tgaaattggcctcaaatttc-atggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagt |
321 |
Q |
| |
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|||| ||| ||||||||||| ||||| |||||| |||| ||||| |||||||||||||| || ||| | || || |||||||||||||||||||| ||| |
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| T |
1968048 |
tgaacttgacctcaaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagtcatttggtccctattcttcaattctccaaga |
1968147 |
T |
|
| Q |
322 |
tacttatccagcttcatccggacattcatctcac |
355 |
Q |
| |
|
|||| | || |||||||| ||| ||||| |||| |
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|
| T |
1968148 |
gacttgttcaacttcatccagactttcatgtcac |
1968181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 315
Target Start/End: Original strand, 1964450 - 1964581
Alignment:
| Q |
183 |
taaaatctatacaagtctttggctaggtgagtttcattcatgaaattggcctcaaatttc-atggataaaacaattcacattgccgttgttccaggtgtc |
281 |
Q |
| |
|
||||||||||| | ||||| |||||||||| |||||| ||| |||| ||| |||||| ||||| ||||| ||||||||||| |||||||||||||| |
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|
| T |
1964450 |
taaaatctatataggtcttgggctaggtgactttcat----gaacttggtctctaatttccatggagaaaaccattcacattgcagttgttccaggtgtt |
1964545 |
T |
|
| Q |
282 |
gggtatgga--cacttagtccctattcttcaattct |
315 |
Q |
| |
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|||||| | || |||||| ||||||||||||||| |
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|
| T |
1964546 |
gggtatatatccatttagtctctattcttcaattct |
1964581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 340
Target Start/End: Complemental strand, 2008956 - 2008849
Alignment:
| Q |
234 |
tcaaatttc-atggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccag |
332 |
Q |
| |
|
||||||||| ||||| |||||| |||| ||||| |||||||||||||| || ||| | || || |||||||||||||||||||| ||| |||| | ||| |
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| T |
2008956 |
tcaaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagccatttggtccctattcttcaattctccaagagacttgttcag |
2008857 |
T |
|
| Q |
333 |
cttcatcc |
340 |
Q |
| |
|
|||||||| |
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|
| T |
2008856 |
cttcatcc |
2008849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 340
Target Start/End: Complemental strand, 2013494 - 2013396
Alignment:
| Q |
242 |
catggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcatcc |
340 |
Q |
| |
|
|||||| |||| |||||| ||||| |||||||||||||| || ||| | |||||| |||| ||||||||||| || ||| ||||| | ||||||||||| |
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| T |
2013494 |
catggagaaaaaaattcatattgcagttgttccaggtgttggatatagtcacttattcccaattcttcaattttcgaagctacttgttcagcttcatcc |
2013396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 340
Target Start/End: Original strand, 1962465 - 1962566
Alignment:
| Q |
239 |
tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcat |
338 |
Q |
| |
|
||||||||| |||||| |||| ||||| |||||||| ||||| || ||| | |||||| |||| |||||||||||||| || ||||| | ||||||||| |
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|
| T |
1962465 |
tttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcat |
1962564 |
T |
|
| Q |
339 |
cc |
340 |
Q |
| |
|
|| |
|
|
| T |
1962565 |
cc |
1962566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 340
Target Start/End: Complemental strand, 2015960 - 2015863
Alignment:
| Q |
243 |
atggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcatcc |
340 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||||| || ||| | || || ||| |||||||||||||||| ||| |||| | ||||||||||| |
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| T |
2015960 |
atggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcagcttcatcc |
2015863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 2005567 - 2005493
Alignment:
| Q |
242 |
catggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctc |
316 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||||||||| || ||| | || || ||| |||||||||||||||| |
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|
| T |
2005567 |
catggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctc |
2005493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 176 - 350
Target Start/End: Original strand, 18189366 - 18189541
Alignment:
| Q |
176 |
ttggctttaaaatctatacaagtctttggctaggtgagtttcattcatgaaattggcctcaaatttc-atggataaaacaattcacattgccgttgttcc |
274 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||| || || ||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
18189366 |
ttggctttaaaatctatacaagtttttggctgcatgagtttcattcatgaacttagcatcaaatttccatggataaaacaattcacattgcagttgttcc |
18189465 |
T |
|
| Q |
275 |
aggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcatccggacattcat |
350 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
18189466 |
aggtgttgggtatggacacttagtccctattcttcaattctcaaagttacttatccatcttcatccagacattcat |
18189541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 18189278 - 18189339
Alignment:
| Q |
108 |
gaagttgtgaaatgcagatatactggtgcataccaaaatatcttaaaaccaaactttcaacc |
169 |
Q |
| |
|
||||||||||||| ||| | |||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
18189278 |
gaagttgtgaaatatagaaacactggtttataccaaaaaatcttaaaaccaaactttcaacc |
18189339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 239 - 356
Target Start/End: Original strand, 5901644 - 5901761
Alignment:
| Q |
239 |
tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcat |
338 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| ||||||||| ||||| | || |||||| |||||||| ||||||| ||| ||||| | ||||| ||| |
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|
| T |
5901644 |
tttcatggagaaaacaattcacattgctgttattccaggtgcttggtatagccatttagtctctattcttgaattctccaagctacttgttcagctccat |
5901743 |
T |
|
| Q |
339 |
ccggacattcatctcact |
356 |
Q |
| |
|
|| ||| ||||| ||||| |
|
|
| T |
5901744 |
ccagactttcatgtcact |
5901761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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