View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21134_high_20 (Length: 281)
Name: NF21134_high_20
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 15176378 - 15176123
Alignment:
| Q |
7 |
ggagcagagaggagaatgtgtcctggctatggtttagcattgttgcacttggaatactttgttgccaattttgttttgaattttgagtggaaagttgtgg |
106 |
Q |
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| T |
15176378 |
ggagcagggaggagaatgtgtcctggctatggtttagcattgttgcacttggaatactttgttgccaattttgttttgaattttgagtggaaagttgtgg |
15176279 |
T |
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| Q |
107 |
atggaaatgagattgatttgtcagaaatgcttcaattcacaactgtcatgaagaaccctttgaaggttcatctaatgcctaggttttagttatttttaga |
206 |
Q |
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| T |
15176278 |
atggaaatgagattgatttgtcagaaatgcttcaattcacaactgtcatgaagaaccctctaaaggttcatctaatatctaggttttagttatttttaga |
15176179 |
T |
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| Q |
207 |
accaattatccatagataaatcttgatttcatgttttgaattgtgttccagattgt |
262 |
Q |
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| T |
15176178 |
accaattatccatagataaatcttgatttcatgtttcgaattgtgttccagattgt |
15176123 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 26494968 - 26495008
Alignment:
| Q |
58 |
gaatactttgttgccaattttgttttgaattttgagtggaa |
98 |
Q |
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| T |
26494968 |
gaatactttgttgctaatttggttttgaactttgagtggaa |
26495008 |
T |
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