View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21134_high_29 (Length: 236)
Name: NF21134_high_29
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_high_29 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 36676173 - 36675953
Alignment:
| Q |
16 |
tgttgttggtgaatgcagggtgatcaagcttctataattggaggagctattaactttgttaaagagcttgagcacaagtttcattttcttggtgctaaga |
115 |
Q |
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| T |
36676173 |
tgttgttggtgaatgcagggtgatcaagcttctataattggaggagctattaactttgttaaagagcttgagcacaagtttcattttcttggtgctaaga |
36676074 |
T |
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| Q |
116 |
aagaaagagatgtgaaatctgatgaagctggtggatcaaacaacatgccattttctgagttctttacatttccacagtattcaacaagtggtagtgtgtg |
215 |
Q |
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| T |
36676073 |
aagaaagagtggtgaaatctgatgaagctggtggatcaaacaacatgccattttctgagttctttacatttccacagtattcaacaagtggtagtgtgtg |
36675974 |
T |
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| Q |
216 |
tgataattctaattctgtagc |
236 |
Q |
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| T |
36675973 |
tgataattctaattctgtagc |
36675953 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 46922039 - 46922119
Alignment:
| Q |
29 |
tgcagggtgatcaagcttctataattggaggagctattaactttgttaaagagcttgagcacaagtttcattttcttggtg |
109 |
Q |
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| T |
46922039 |
tgcagggtgatcaagcatcaattattgggggtgctattaactttgttaagaagcttgagcagaagctacaatttcttggtg |
46922119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0194 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 26548 - 26581
Alignment:
| Q |
32 |
agggtgatcaagcttctataattggaggagctat |
65 |
Q |
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| T |
26548 |
agggtgatcaagcttctataattggaggggctat |
26581 |
T |
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