View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21134_high_3 (Length: 619)
Name: NF21134_high_3
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 26 - 606
Target Start/End: Complemental strand, 37319024 - 37318437
Alignment:
| Q |
26 |
gacaatatcgataccactttttaattaggcatggcatgactcattgaatttatcttacaggacccacctcatttgctcctatcattgagatggccatgac |
125 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37319024 |
gacaatatcgataccactttttaattagccatggcatgactcattgaatttatcttacaggacccacctcatttgctcctatcattgagatgggcatgac |
37318925 |
T |
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| Q |
126 |
tattgttgagaaaagtggtggccaatatcatgtcttgcttataattgctgatggacaggtatctttaatgcacatttcattccattcgaaagtacaaatt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37318924 |
tattgttgagaaaagtggtggccaatatcatgtcttgcttataattgctgatggacaggtatctttaatgcacatttcattccattcgaaagtacaaatt |
37318825 |
T |
|
| Q |
226 |
ttaagtagttttttaaaaatgcactggccataagttccaaagagttagtatgctagttatgtgaatgattctcttatg-------ttgaagaaattatgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37318824 |
ttaagtagttttttaaaaatgcactggccataagttccaaagagttagtatgctagttatgtgaatgattctcttatgcgtcttgttgaagaaattatgt |
37318725 |
T |
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| Q |
319 |
tgtaattatatcatgattcgtgatagcaaattttattgtttacttcgttaatgacagtaataacaacattatctgctacatttagctcataaatcacact |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37318724 |
tgtaattatatcatgattcgtgatagcaaattttattgtttacttcgttaatgacagtaataataacattatctgctacatttagctcataaatcacact |
37318625 |
T |
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| Q |
419 |
gaaacatgatgacaattgtagatattcatttttcctttcctatgcaagatcttgaaaaattgatgcccgagttttgccacaggtgacaagaagtgttgac |
518 |
Q |
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| T |
37318624 |
gaaacatgatgacaattgtagatattcatttttcctttcctatgcaagatcttgaaaaattgatgcccgagttttgccacaggtgacaagaagtgttgac |
37318525 |
T |
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| Q |
519 |
acagagaatggcaagctaagttctcaggaaaagaagacaattgatgcaatagtgaaagccaggtatgttttgtagttgcttctctcct |
606 |
Q |
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| T |
37318524 |
acagagaatggcaagctaagttctcaggaaaagaagacaattgatgcaatagtgaaagccaggtatgttttgtagttgcttctctcct |
37318437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 37408262 - 37408302
Alignment:
| Q |
220 |
caaattttaagtagttttttaaaaatgcactggccataagt |
260 |
Q |
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| T |
37408262 |
caaattttaagtagttttttaaatatgcactagccataagt |
37408302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 39202635 - 39202511
Alignment:
| Q |
82 |
acaggacccacctcatttgctcctatcattgagatggccatgactattgttgagaaaagtggtggccaatatcatgtcttgcttataattgctgatggac |
181 |
Q |
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| T |
39202635 |
acaggaccgacttcgttcgcccctattattgagatggccatgactattgttgaacaaagtgctggtcaatatcatgtcttgctaataattgctgatggac |
39202536 |
T |
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| Q |
182 |
aggta--tctttaatgcacatttca |
204 |
Q |
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| T |
39202535 |
aggtaattctttaatccatatttca |
39202511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 34393285 - 34393211
Alignment:
| Q |
84 |
aggacccacctcatttgctcctatcattgagatggccatgactattgttgagaaaagtggtggccaatatcatgt |
158 |
Q |
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| T |
34393285 |
aggacctacatcatttgccccaatcattgagatggcaatcaccattgttgagcaaagtgaaggccaataccatgt |
34393211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 7473547 - 7473617
Alignment:
| Q |
117 |
ggccatgactattgttgagaaaagtggtggccaatatcatgtcttgcttataattgctgatggacaggtat |
187 |
Q |
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| T |
7473547 |
ggccatgacaattgttgagcagagtggaggccaataccatgttttggtgataattgctgatggccaggtat |
7473617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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