View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21134_high_31 (Length: 235)
Name: NF21134_high_31
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_high_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 49655354 - 49655135
Alignment:
| Q |
1 |
acactttactctcttatctgtaaattacacctgtgagaatccattctcggtcccaactcaatcaaccactaacttgaaatttgagtacttacagttacat |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49655354 |
acactttactctcttatgtgtaaattacatctgtgagaatccattctcggtcccaactcaatcaaccactaacttgagatttgagtacttacagttacat |
49655255 |
T |
|
| Q |
101 |
cacacctttcggagaactcttgttgtagtccagacatcccgaccacctctcgaggtccaactcgtatcagattttttgttttcagccattctttcttcta |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
49655254 |
cacaccttttggagaactcttgttgtagtccagacatcccgaccacctctcgaggtccaactcgtatcagattttttggttccagccattctttcttcta |
49655155 |
T |
|
| Q |
201 |
aaacactataaacatataat |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
49655154 |
aaacactataaacatataat |
49655135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University