View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21134_high_5 (Length: 535)
Name: NF21134_high_5
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_high_5 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 24)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 2818892 - 2818368
Alignment:
| Q |
1 |
cctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcagtttcgtgacaa--- |
97 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||| | |||||||| ||| | || ||||||||||| ||| ||| || |
|
|
| T |
2818892 |
cctcttatgttctaggtatttccttacctctataatcagtaacctgtcatccattttgcgtaaaatctctagatcagggtcttcagcttcctgataaaat |
2818793 |
T |
|
| Q |
98 |
-------tcatttttatcagtagttctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgtcaccttttggctgtcaa |
190 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2818792 |
tgctccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagctcgacaatcaaactgtgttgttaccttttggctgtcaa |
2818693 |
T |
|
| Q |
191 |
aaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaaccatatagttc |
290 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2818692 |
aaactagcttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgctcggctgcaccctccaataaccaaccatatagttc |
2818593 |
T |
|
| Q |
291 |
ttctctcgggccttcaaatcctacgatttctgtttcttcaatgaaaagagaagagagtcgaggatcacgccatcttcctgtttctgactctccacatccg |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
2818592 |
ttctctcgggccttcaaatcctacgatttctgtttcttcaatgaaaagagaagacagtcgaggatcacgccatcctcctgtgtctgactctccacatccg |
2818493 |
T |
|
| Q |
391 |
ttgctttggcatgaggatccttgttcatgtaaaatttggaagttatacctctcgcttctttccttgattccacgaattgacaacttgatgtcctgaatct |
490 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2818492 |
ttgctttggcacgaggatccttgttcatgcgaaatttggaagttatacctctcgcttctttccttgattccacgaattgacaacttgatgtcctgaatct |
2818393 |
T |
|
| Q |
491 |
ctgatgcaattttatgacggggagt |
515 |
Q |
| |
|
|||||||||||| || ||||||||| |
|
|
| T |
2818392 |
ctgatgcaatttcataacggggagt |
2818368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 2759549 - 2759027
Alignment:
| Q |
1 |
cctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcagtttcgtgacaa--- |
97 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2759549 |
cctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcagtttcctgacaaaat |
2759450 |
T |
|
| Q |
98 |
-------tcatttttatcagtagttctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgtcaccttttggctgtcaa |
190 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2759449 |
tgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagcttgacaatcaaactgtgttgttaccttttggctgtcaa |
2759350 |
T |
|
| Q |
191 |
aaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaaccatatagttc |
290 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2759349 |
aaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgaaccctccaataaccaaccatatagttc |
2759250 |
T |
|
| Q |
291 |
ttctctcgggccttcaaatcctacgatttctgtttcttcaatgaaaagagaagagagtcgaggatcacgccatcttcctgtttctgactctccacatccg |
390 |
Q |
| |
|
|||| | ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||| | | |
|
|
| T |
2759249 |
ttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctcttcggtagtg |
2759150 |
T |
|
| Q |
391 |
ttgctttggcatgaggatccttgttcatgtaaaatttggaagttatacctctcgcttctttccttgattccacgaattgacaacttgatgtcctgaatct |
490 |
Q |
| |
|
||||| | ||||||||||||||||| | ||||||| |||||||||||| ||||||||||||||||||| |||||| || ||||||||| ||||||| |
|
|
| T |
2759149 |
ttgctgctgtttgaggatccttgttcatttgaaatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatct |
2759050 |
T |
|
| Q |
491 |
ctgatgcaattttatgacgggga |
513 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
2759049 |
ctgatgcaattttgtgacgggga |
2759027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 2769404 - 2768880
Alignment:
| Q |
1 |
cctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcagtttcgtgacaa--- |
97 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| | ||||||| ||||||| | ||| ||||| ||||| | ||||| ||||||||||| |||||| |
|
|
| T |
2769404 |
cctcttatgttgtaggtatttccttacctctattaccagtgacatgtcatccattttgtgtaacatctttagcagaggttcttcagtttcctgacaaaat |
2769305 |
T |
|
| Q |
98 |
-------tcatttttatcagtagttctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgtcaccttttggctgtcaa |
190 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| | || || ||||||||||||||| |
|
|
| T |
2769304 |
tgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgcagttaccttttggctgtcat |
2769205 |
T |
|
| Q |
191 |
aaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaaccatatagttc |
290 |
Q |
| |
|
||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| ||| ||| |
|
|
| T |
2769204 |
aaactagtttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataaccaaccaaataattc |
2769105 |
T |
|
| Q |
291 |
ttctctcgggccttcaaatcctacgatttctgtttcttcaatgaaaagagaagagagtcgaggatcacgccatcttcctgtttctgactctccacatccg |
390 |
Q |
| |
|
|||||| |||||||| |||||||| ||||||||||||||||| || || ||||| | |||||||||||||||||||| ||||||||||||||| | | |
|
|
| T |
2769104 |
ttctcttgggccttccaatcctacaatttctgtttcttcaataaagagggaagacatccgaggatcacgccatcttccactttctgactctccactactg |
2769005 |
T |
|
| Q |
391 |
ttgctttggcatgaggatccttgttcatgtaaaatttggaagttatacctctcgcttctttccttgattccacgaattgacaacttgatgtcctgaatct |
490 |
Q |
| |
|
|| || | ||||||||||||||||||| || |||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2769004 |
ttcctgctgtttgaggatccttgttcatgtgaagtttgaaagctatacctctcgcttctttccttgattccacgaattgacaacttaatgtcctgaatct |
2768905 |
T |
|
| Q |
491 |
ctgatgcaattttatgacggggagt |
515 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
2768904 |
ctaatgcaattttatgacggggagt |
2768880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 116 - 513
Target Start/End: Original strand, 2855738 - 2856135
Alignment:
| Q |
116 |
ctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgtcaccttttggctgtcaaaaacttgcttggcaagagtggtttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||| | |||||| ||||||||||||||||||| | ||||||||||||| ||||| |
|
|
| T |
2855738 |
ctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgttgttaccttttggctgtcaaaaattagcttggcaagagtagtttt |
2855837 |
T |
|
| Q |
216 |
gcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaaccatatagttcttctctcgggccttcaaatcctacg |
315 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| ||||||||| | ||| ||||||||||||||| | | ||||||| | |||||||||| ||||| |
|
|
| T |
2855838 |
tcctataccccccattcccaccactgaaatcactttgcgctcagatataccttccaataaccaaccagacaattcttcttttgggccttcaatgcctaca |
2855937 |
T |
|
| Q |
316 |
atttctgtttcttcaatgaaaagagaagagagtcgaggatcacgccatcttcctgtttctgactctccacatccgttgctttggcatgaggatccttgtt |
415 |
Q |
| |
|
| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |||||||| | ||| ||||||| |||||||||||| | |
|
|
| T |
2855938 |
acttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctccactgcggtttctttggcttgaggatccttgct |
2856037 |
T |
|
| Q |
416 |
catgtaaaatttggaagttatacctctcgcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaattttatgacgggga |
513 |
Q |
| |
|
| ||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2856038 |
cgtgtgaaatttgaaagttatacctctggcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaattttatgatgggga |
2856135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 116 - 513
Target Start/End: Original strand, 2838528 - 2838928
Alignment:
| Q |
116 |
ctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgtcaccttttggctgtcaaaaacttgcttggcaagagtggtttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||| ||||||||| | || ||| ||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
2838528 |
ctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaaaaactagcttggcaagagtggtttt |
2838627 |
T |
|
| Q |
216 |
gcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaaccatatagttcttctctcgggccttcaaatcctacg |
315 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
2838628 |
tcctagaccccccattcctaccactgatatgactgtgcgctcagctgcaccctccaataaccaaccatatatttcttctcttgggccttcaaatcctaca |
2838727 |
T |
|
| Q |
316 |
atttctgtttcttcaatgaaaagagaagagagtcgaggatcacgccatcttcctgtttctgactctcc---acatccgttgctttggcatgaggatcctt |
412 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| || |||||||||| |||||| |||||| || | |||||| || ||||||||||| |
|
|
| T |
2838728 |
atttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgttgctgctgcttgaggatcctt |
2838827 |
T |
|
| Q |
413 |
gttcatgtaaaatttggaagttatacctctcgcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaattttatgacgggg |
512 |
Q |
| |
|
|||||| | ||||||| |||||||||||||||||||||| ||||||||| || ||| || ||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
2838828 |
gttcatttgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctctgatgcaattttgtgacgggg |
2838927 |
T |
|
| Q |
513 |
a |
513 |
Q |
| |
|
| |
|
|
| T |
2838928 |
a |
2838928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 2807602 - 2807130
Alignment:
| Q |
1 |
cctcttatcttctaggtatttccttacctctataatcagtgacctgtcatctaacttgcgtaacttctttggaagagggtcttcagtttcgtgacaa--- |
97 |
Q |
| |
|
|||||||| || ||||||| ||| || |||| ||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
2807602 |
cctcttatgttgcaggtattgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaat |
2807503 |
T |
|
| Q |
98 |
-------tcatttttatcagtagttctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgtcaccttttggctgtcaa |
190 |
Q |
| |
|
|||| ||||||| | |||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| ||| ||||||| |||| |
|
|
| T |
2807502 |
tgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacgacaatcaaagtgtgttgttaccgtttggctatcaa |
2807403 |
T |
|
| Q |
191 |
aaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaaccatatagttc |
290 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||| || | | ||| |
|
|
| T |
2807402 |
aaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttc |
2807303 |
T |
|
| Q |
291 |
ttctctcgggccttcaaatcctacgatttctgtttcttcaatgaaaagagaagagagtcgaggatcacgccatcttcctgtttctgactctccacatccg |
390 |
Q |
| |
|
|||||| ||| |||||||||||| |||||| |||||||||| ||||| ||||| ||||||||||||||||||||||| |||||| ||||| | | | |
|
|
| T |
2807302 |
ttctcttgggaattcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctctagtgctg |
2807203 |
T |
|
| Q |
391 |
ttgctttggcatgaggatccttgttcatgtaaaatttggaagttatacctctcgcttctttccttgattccacgaa |
466 |
Q |
| |
|
|||| ||| ||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
2807202 |
ttgc---ggcttgatgatccttgttcatgtgaaatttgtaagttatacctctcacttctttccttgattccgcgaa |
2807130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 116 - 513
Target Start/End: Complemental strand, 2749205 - 2748811
Alignment:
| Q |
116 |
ctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgtcaccttttggctgtcaaaaacttgcttggcaagagtggtttt |
215 |
Q |
| |
|
||||||||||||| |||||||||||| ||| |||||| ||||||||||| |||| || ||||||| ||| ||||||||| ||||||||||||||||||| |
|
|
| T |
2749205 |
ctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggcaagagtggtttt |
2749106 |
T |
|
| Q |
216 |
gcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaaccatatagttcttctctcgggccttcaaatcctacg |
315 |
Q |
| |
|
||||| || |||||||||||||| || ||||| |||||||||||| |||| ||||||||||||||| | ||||||||| | ||| |||||| || || |
|
|
| T |
2749105 |
tcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttgggacttcaataccaaca |
2749006 |
T |
|
| Q |
316 |
atttctgtttcttcaatgaaaagagaagagagtcgaggatcacgccatcttcctgtttctgactctccacatccgttgctttggcatgaggatccttgtt |
415 |
Q |
| |
|
| ||||||||||||||| ||||||||||| |||||||||||| ||||| |||| ||||| |||||| | |||| || ||| | |||||||| |
|
|
| T |
2749005 |
acttctgtttcttcaataaaaagagaagacagtcgaggatcatgccattttccattttctctctctcctatgctaatgct---gcttgaagttccttgtt |
2748909 |
T |
|
| Q |
416 |
catgtaaaatttggaagttatacctctcgcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaattttatgacgggga |
513 |
Q |
| |
|
| ||| ||||||| |||||||||||||| |||||||||||||||||||||||||| || || ||||||||||| || ||||| || | |||||||||| |
|
|
| T |
2748908 |
cgtgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacgggga |
2748811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 118 - 497
Target Start/End: Complemental strand, 2797569 - 2797190
Alignment:
| Q |
118 |
ctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgtcaccttttggctgtcaaaaacttgcttggcaagagtggttttgc |
217 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| ||||||||||| | |||||| |||||||| ||||| |||||| ||||||||||||||||||| | |
|
|
| T |
2797569 |
ctcacggtgtatgattgagaaactgtgatgcaagcacgacaatcaaattttgttgttaccttttgactgtcgaaaactagcttggcaagagtggtttttc |
2797470 |
T |
|
| Q |
218 |
ctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaaccatatagttcttctctcgggccttcaaatcctacgat |
317 |
Q |
| |
|
||||||| |||||||| |||||||||||||| ||||||||||||| ||||| | |||||||||| | | |||||| ||||||||||||||||| || || |
|
|
| T |
2797469 |
ctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaaccaaccagacaattcttccctcgggccttcaaatccgacaat |
2797370 |
T |
|
| Q |
318 |
ttctgtttcttcaatgaaaagagaagagagtcgaggatcacgccatcttcctgtttctgactctccacatccgttgctttggcatgaggatccttgttca |
417 |
Q |
| |
|
| | ||||||||||| ||||| ||||| ||||||||||||| |||||||| | || | ||||| || | |||| | || ||| |||||| || |
|
|
| T |
2797369 |
tgcagtttcttcaataaaaagggaagacagtcgaggatcacaccatcttctattatccgtctctctactgctgttgttgctgcttgatgatcctggtgtc |
2797270 |
T |
|
| Q |
418 |
tgtaaaatttggaagttatacctctcgcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgc |
497 |
Q |
| |
|
||| ||||||| |||||||||||||| |||||||||||||||||||||||||| | ||| |||| || |||||| ||||| |
|
|
| T |
2797269 |
tgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgttcttaatctcagatgc |
2797190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 116 - 382
Target Start/End: Complemental strand, 5413096 - 5412830
Alignment:
| Q |
116 |
ctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgtcaccttttggctgtcaaaaacttgcttggcaagagtggtttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||||| | ||||||||| |||| || ||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
5413096 |
ctctcacagtgtatgattgagaaactgttacgcaagcacaacaatcaaagtgtgctgataccttttggctttcaaaaactagcttggcaagagtggtttt |
5412997 |
T |
|
| Q |
216 |
gcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaaccatatagttcttctctcgggccttcaaatcctacg |
315 |
Q |
| |
|
||||| |||||||||||||||||||| || || || || || |||||||| ||||||||||||||| | | ||||||| | || ||||||| |||||| |
|
|
| T |
5412996 |
tcctaggccccccattcctaccactgatatgactgtacgttccgctgcaccatccaataaccaaccagacaattcttcttttggaccttcaattcctaca |
5412897 |
T |
|
| Q |
316 |
atttctgtttcttcaatgaaaagagaagagagtcgaggatcacgccatcttcctgtttctgactctc |
382 |
Q |
| |
|
| |||||||||| |||||| || ||||| ||||||||||| ||||||||||| |||||| ||||| |
|
|
| T |
5412896 |
acttctgtttctgtaatgaatagggaagacagtcgaggatctcgccatcttccattttctgtctctc |
5412830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 202 - 470
Target Start/End: Complemental strand, 2790491 - 2790223
Alignment:
| Q |
202 |
gcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaaccatatagttcttctctcgggc |
301 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| | | |||||| ||||||| |
|
|
| T |
2790491 |
gcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctccaataaccaaccagacaattcttccctcgggc |
2790392 |
T |
|
| Q |
302 |
cttcaaatcctacgatttctgtttcttcaatgaaaagagaagagagtcgaggatcacgccatcttcctgtttctgactctccacatccgttgctttggca |
401 |
Q |
| |
|
|||||||||| || ||| | ||||||||||||||||| ||||| | ||||||||| ||||||||| | || | ||||| || | |||||| || |
|
|
| T |
2790391 |
cttcaaatccgacaattgcagtttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgctgct |
2790292 |
T |
|
| Q |
402 |
tgaggatccttgttcatgtaaaatttggaagttatacctctcgcttctttccttgattccacgaattga |
470 |
Q |
| |
|
||| |||||| || ||| ||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2790291 |
tgatgatcctggtgtctgtgaaatttgaaagttatacctctcacttctttccttgattccacgaattga |
2790223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 422 - 497
Target Start/End: Complemental strand, 5412811 - 5412736
Alignment:
| Q |
422 |
aaatttggaagttatacctctcgcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgc |
497 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
5412811 |
aaatttgaaagttatacctctcacttctttccttgattccacgaattgacaacttaatgtcctgaatctcagatgc |
5412736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 21945732 - 21945658
Alignment:
| Q |
183 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
257 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| ||| | || |||||||||||||| |||| ||||||||||| |
|
|
| T |
21945732 |
gctgtcaaaaactttcttggctagagtggtttttccttgccctcccattcctaccacggaaactacagtgcgctc |
21945658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 21930529 - 21930455
Alignment:
| Q |
183 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
257 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||| | || |||||||||||||| || | |||||||||||| |
|
|
| T |
21930529 |
gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc |
21930455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 22028108 - 22028034
Alignment:
| Q |
183 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
257 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||| | || |||||||||||||| || | |||||||||||| |
|
|
| T |
22028108 |
gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc |
22028034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 22034625 - 22034551
Alignment:
| Q |
183 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
257 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||| | || |||||||||||||| || | |||||||||||| |
|
|
| T |
22034625 |
gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc |
22034551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 22052841 - 22052767
Alignment:
| Q |
183 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
257 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||| | || ||||||||||||| |||| |||||||||||| |
|
|
| T |
22052841 |
gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccagagaaaccacagtgcgctc |
22052767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 22187096 - 22187022
Alignment:
| Q |
183 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
257 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||| | || |||||||||||||| |||| ||||||||||| |
|
|
| T |
22187096 |
gctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagaaagaacagtgcgctc |
22187022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 21937261 - 21937187
Alignment:
| Q |
183 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
257 |
Q |
| |
|
|||||||||| ||| ||| || ||||||||||| ||| | || |||||||||||||| |||| ||||||||||| |
|
|
| T |
21937261 |
gctgtcaaaagctttcttagctagagtggtttttccttgccctcccattcctaccacagaaacaacagtgcgctc |
21937187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 22104831 - 22104757
Alignment:
| Q |
183 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
257 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||| ||| | || |||||||||||||| |||| ||||||||||| |
|
|
| T |
22104831 |
gctgtcaaaaactctcttggctagagttgtttttccttgccctcccattcctaccaccgaaactacagtgcgctc |
22104757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 22115193 - 22115119
Alignment:
| Q |
183 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
257 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||| ||| | || |||||||||||||| |||| ||||||||||| |
|
|
| T |
22115193 |
gctgtcaaaaactttctttgatagagtggtttttccttgccctcccattcctaccacagaaagaacagtgcgctc |
22115119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 22368262 - 22368320
Alignment:
| Q |
175 |
accttttggctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcc |
233 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||||||||| || || || |||||||| |
|
|
| T |
22368262 |
accttttggttgtcaaaaactttcttggctagagtggtttttcccagtcctcccattcc |
22368320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 22648516 - 22648590
Alignment:
| Q |
183 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgcgctc |
257 |
Q |
| |
|
||||||||| |||| |||||||||||||||| ||||| || ||||| |||||||| || || ||||||||||| |
|
|
| T |
22648516 |
gctgtcaaacacttttctggcaagagtggtttttcctagccctcccatacctaccacagagatgacagtgcgctc |
22648590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 502
Target Start/End: Original strand, 22648771 - 22648829
Alignment:
| Q |
444 |
gcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaattt |
502 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||| ||||| |||||||| |||||||||| |
|
|
| T |
22648771 |
gcttttttccttgattccacgaataaataacttaatgtcttgaatctcggatgcaattt |
22648829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 22208128 - 22208096
Alignment:
| Q |
183 |
gctgtcaaaaacttgcttggcaagagtggtttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
22208128 |
gctgtcaaaaacttgcttggcaagagttgtttt |
22208096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 178; Significance: 9e-96; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 116 - 497
Target Start/End: Original strand, 6080 - 6461
Alignment:
| Q |
116 |
ctctcacagtgtatgattgagaaactatgatgcaagctcgacaatcaaactgtgttgtcaccttttggctgtcaaaaacttgcttggcaagagtggtttt |
215 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6080 |
ctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaaaaactagcttggcaagagtggtttt |
6179 |
T |
|
| Q |
216 |
gcctagaccccccattcctaccactgaaatcacagtgcgctcagctgcaccctccaataaccaaccatatagttcttctctcgggccttcaaatcctacg |
315 |
Q |
| |
|
|||| ||| |||||||||||||||||||| || ||||||||||||| || |||||||||||||||||||| ||| ||||| |||||||| |||||||| |
|
|
| T |
6180 |
ccctatacctcccattcctaccactgaaattacggtgcgctcagctggactctccaataaccaaccatataattcctctcttgggccttcgaatcctaca |
6279 |
T |
|
| Q |
316 |
atttctgtttcttcaatgaaaagagaagagagtcgaggatcacgccatcttcctgtttctgactctccacatccgttgctttggcatgaggatccttgtt |
415 |
Q |
| |
|
| ||| ||||||||||| ||||| | ||| | ||||||||||||||||||||| |||||| |||||| | | |||| | ||| ||||| ||| |
|
|
| T |
6280 |
acttcagtttcttcaataaaaagggcagataatcgaggatcacgccatcttccattttctgcctctcctgtgctgctgctgacacttgatgatccaggtt |
6379 |
T |
|
| Q |
416 |
catgtaaaatttggaagttatacctctcgcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgc |
497 |
Q |
| |
|
||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||| ||| |||||||||||||| ||||| |
|
|
| T |
6380 |
catgtaaaatttgaaagttatacctttcacttctgtccttgattccacgaattgacagctttatgtcctgaatctcagatgc |
6461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 27294656 - 27294586
Alignment:
| Q |
183 |
gctgtcaaaaacttgcttggcaagagtggttttgcctagaccccccattcctaccactgaaatcacagtgc |
253 |
Q |
| |
|
|||||||||||||| |||| | ||||||||||| ||| | || |||||||||||||| |||| ||||||| |
|
|
| T |
27294656 |
gctgtcaaaaactttcttgactagagtggtttttccttgtcctcccattcctaccacagaaactacagtgc |
27294586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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