View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21134_low_1 (Length: 1230)
Name: NF21134_low_1
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 789; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 301 - 1215
Target Start/End: Complemental strand, 34555229 - 34554315
Alignment:
| Q |
301 |
acttttccactatttaaaatgtaacttataagttcaaactcttcatccgtgccttcataatttctgaatataaaagtagtaaggtgtgatgaaagacagc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34555229 |
acttttccactatttaaaatgtaacttataagttcaaactcttcatccgtgccttcataatctctgaatataaaagtagtaaggtgtgatgaaagacagc |
34555130 |
T |
|
| Q |
401 |
taggaactattgttggttgtctccattcaatttcattatcgcatagttcatcaacctgtcaagcgaggtcacaacacaactataattgtatccaatgaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
34555129 |
taggaactattgttggttgtctccattcaatttcattatcacatagttcatcaacctgtcaagtgaggtcacaacacaactataattgtatccaatgaaa |
34555030 |
T |
|
| Q |
501 |
caaagtaaaaataaaaattcaagaaataattagctaaatctcaagagttaactaaccttgataatctctagaaattctagattggggcatttttctagca |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34555029 |
caaagtaaaaataaaaattcaagaaataattagctaaatctcaagagttaactaaccttgataatctctagaaattctagattggggcatttttctagca |
34554930 |
T |
|
| Q |
601 |
acagctcaactagaaaatatgaatcaaggatttttaaatataattgtagatgacccaaatgatcaaatgttggaaattctagacaagcataagtaagcac |
700 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34554929 |
acaactcaactagaaaatatgaatcaaggatttttaaatataattgtagatgacccaaatgatcaaatgttggaaattctagacaagcataagtaagcac |
34554830 |
T |
|
| Q |
701 |
ctgcaagtggataaaaataacaaagaattatgagaaataacatacaattcctatactaaaaacatggggtaaatagaacttttagtccttatatataata |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34554829 |
ctgcaagtggataaaaataacaaagaattatgagaaataacatacaattcctatactaaaaacatggggtaaatagaacttttagtccttatatataata |
34554730 |
T |
|
| Q |
801 |
tacttttctgaccaactgtttacaaaaatggaaggagaaaaaacgtagaaaacatatgaattcagtgtgcacgtgataagagaaggtaagtttagcaaag |
900 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34554729 |
tacttttctaaccaactgtttacaaaagtggaagggaaaaaaacgtagaaaacatatgaattcagtgtgcacgtgataagagaaggtaagtttagcaaag |
34554630 |
T |
|
| Q |
901 |
aatcatacctctgtggtatacaaatctaagcaaagaaacctggttttacgaaccccattgaaaagatttgctatannnnnnnnnnnnnnnnnnnnnncat |
1000 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||| |
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|
| T |
34554629 |
aatcatacctctgtggtatacaaatctaagcaaagaaatctggttttacgaaccccattgaaaatatttgctatattttcttttacttttttattttcat |
34554530 |
T |
|
| Q |
1001 |
aatcaaaatggataccaatatgtgcttctttcaaattgtccaaattctcaaccacatagttaatcgccttagtttctttcatcacaagttactcaagaag |
1100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34554529 |
aatcaaaatggataccaatatgtgcttctttcaaattgtccaaattctcaaccacatagttaatcgccttagtttctttcatcacaaggcactcaagaag |
34554430 |
T |
|
| Q |
1101 |
aggagtgttaatatgaagtctttcatcaaaactcctaaaaaataacctcttcaacgaaggcacacatattccaaacaaagaagtacgtttgaatttcact |
1200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
34554429 |
aggagttttaatatgaagtctttcatcaaaactcctaacaaataacctcttcaacgaaggcacacatattccaaacaaagaagtacgtttgaacttcact |
34554330 |
T |
|
| Q |
1201 |
tcctcgtagaaaagt |
1215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34554329 |
tcctcgtagaaaagt |
34554315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 34554032 - 34554321
Alignment:
| Q |
18 |
atatccctcacttggttagttcaatagtttccatggcaactactcaaaaagctgacgagatagacctctctttatatcgtttaaaagtttatttgcctca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34554032 |
atatccctcacttggttagttcaatagtttccatggcaactactcaaaaagtttacgagatagacctctctttatatcgtttaaaagtttatttgcctca |
34554131 |
T |
|
| Q |
118 |
ccagctttatacatgcaaaacactcactgttttgaggttggttgggacatttcatctcaatgttccttctcatcttcatcttcctttgttgaagattttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34554132 |
ccagctttatacatgcaaaacactcactgttttgaggttggttgggacatttcatctcaatgttccttctcatcttcatcttcctttgttgaagattttg |
34554231 |
T |
|
| Q |
218 |
catctcaatcttttttgttttgttgatgatcacgatgatgatgctcttatgaggtttttatctagttgtcctgttcttgaacaacttttc |
307 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
34554232 |
catctcaatcttttgtgctttgttgatgatcacgatgatgatgctcttatgaggtttttatctagttgtcctgctcttgaacaacttttc |
34554321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 301 - 762
Target Start/End: Complemental strand, 36284365 - 36283902
Alignment:
| Q |
301 |
acttttccactatttaaaatgtaacttataagttcaaactcttcatccgtgccttcataatttctgaatataaaagtagtaaggtgtgatgaaagacagc |
400 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36284365 |
acttttccactcttcaaaatgtaccttataagttcaaactcttcatccgtgccttcataatctctgaatatgaaagtagtaaggtgtgatgaaagacagc |
36284266 |
T |
|
| Q |
401 |
taggaactattgttggttgtctccattcaatttcattatcgcatagttcatcaacctgtcaagcgaggtcacaacacaactataattgtatccaatgaaa |
500 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||||||||||||| ||||||||||||||| ||| |||||| ||| |||||||||| | ||| |
|
|
| T |
36284265 |
taggaactattgttggttctgcccatttaatttcattatcgcataggtcatcaacctgtcaaaagagatcacaaaacatctataattgtcatgagaaaaa |
36284166 |
T |
|
| Q |
501 |
caaagtaaaaataaaaattcaagaaataattagctaaatctcaagagttaactaaccttgataatctctagaaattctagattggggcatttttctagca |
600 |
Q |
| |
|
|||||||| ||||| | || ||||||| | ||||||||||||| ||| |||||| |||||||| |||| || |||||||||||||||||||| | |
|
|
| T |
36284165 |
gaaagtaaattaaaaaagttaaccgataattaaccaaatctcaagagtaaaccaaccttaataatctcaagaacatcaagattggggcatttttctagta |
36284066 |
T |
|
| Q |
601 |
acagctcaactagaaaatatgaatcaaggatttttaaatataattgtagatgacccaaatgatcaaatgttggaaattctagacaagcataagtaagcac |
700 |
Q |
| |
|
|||| | ||||||||||| ||| | || | ||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36284065 |
acagtttaactagaaaatgtgagttaaaggtttttaaatataattgtagataacccaaattgttaaatgttggaaattctagacaagcataagtaagcac |
36283966 |
T |
|
| Q |
701 |
ctgcaa-gtggataaaaataac-aaagaattatgagaaataacatacaattcctatactaaaaa |
762 |
Q |
| |
|
|||||| |||||||||||||| ||||| |||||| |||||| | |||||||||||| |||||| |
|
|
| T |
36283965 |
ctgcaacatggataaaaataacaaaagagttatgaaaaataagacacaattcctatattaaaaa |
36283902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 1002 - 1181
Target Start/End: Complemental strand, 36283786 - 36283607
Alignment:
| Q |
1002 |
atcaaaatggataccaatatgtgcttctttcaaattgtccaaattctcaaccacatagttaatcgccttagtttctttcatcacaagttactcaagaaga |
1101 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||| |||| ||||||||||||| |||| ||| ||||||||||||||| | ||||| |||||||||||| |
|
|
| T |
36283786 |
atcaaaatagataccaatacgtgcttctttcaatttgttcaaattctcaacctcataattactcgccttagtttcttcaagtacaaggtactcaagaaga |
36283687 |
T |
|
| Q |
1102 |
ggagtgttaatatgaagtctttcatcaaaactcctaaaaaataacctcttcaacgaaggcacacatattccaaacaaaga |
1181 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| | |||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
36283686 |
ggagtgttaatatgaattttttcatcaaaactcctaacatgtaacctcttcaatgtaggcacacatattccaaacaaaga |
36283607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 36283299 - 36283501
Alignment:
| Q |
18 |
atatccctcacttggttagttcaatagtttccatggcaactactcaaaaagctgacgagatagacctctctttatatcgtttaaaagtttatttgcctca |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||| || ||||||| ||| |||||||| || ||||||||| |||||||||||||||||||| |
|
|
| T |
36283299 |
atatcccacacttggttagttcaatagtttgcatggcaagtaaacaaaaagttgaggagatagatctttctttatatagtttaaaagtttatttgccttg |
36283398 |
T |
|
| Q |
118 |
ccagctttatacatgcaaaacactcactgttttgaggttggttgggacatttcatctcaatgttccttctcatcttcatcttcctttgttgaagattttg |
217 |
Q |
| |
|
|| ||| | ||| |||||||| |||||||| ||||||||||| |||| | || || |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36283399 |
tgagattttcgcttgcgaaacactcgttgttttgaagttggttgggagattttacctgaaccttccttctcatcttcatcttcctttgctgaagattttg |
36283498 |
T |
|
| Q |
218 |
cat |
220 |
Q |
| |
|
||| |
|
|
| T |
36283499 |
cat |
36283501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 906 - 975
Target Start/End: Complemental strand, 36283882 - 36283813
Alignment:
| Q |
906 |
tacctctgtggtatacaaatctaagcaaagaaacctggttttacgaaccccattgaaaagatttgctata |
975 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||||||||| ||| ||||||| ||||||| |||| |
|
|
| T |
36283882 |
tacctctgtggaatccatatctaagcaaagaaacctggttttatgaatgccattgaggagatttgatata |
36283813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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