View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21134_low_10 (Length: 450)
Name: NF21134_low_10
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 20 - 442
Target Start/End: Original strand, 54727081 - 54727504
Alignment:
| Q |
20 |
ttactaagataattgaatgtaatgcagatataccacacccttgaatgtatctcaggattttgatgttgtgtcaatttattgactttataaagtatattgt |
119 |
Q |
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| T |
54727081 |
ttactaagataattgaatgtaatgcagatataccacacccttgaatgtatctcaggattttgatgttgtgtcaatttattgactttataaagtatattgt |
54727180 |
T |
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| Q |
120 |
cctattgattttccagttctaaaatgattgaagtatatagtaacttatgatttgaatattaagtaaaatatgtagtgaaatagaccttggaagtgaggca |
219 |
Q |
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| T |
54727181 |
cctattgattttccagttctaaaatgattgaagtatatagtaacttatgatttgaatattaagtaaaatatgtagtgaaatagaccttggaagtgaggca |
54727280 |
T |
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| Q |
220 |
atatttggtcctttcatttcccggaaagctatctgaaaccagaaactttccctctccaagaatccttactccttcttcagcacagtaagaaaccaaatca |
319 |
Q |
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| T |
54727281 |
atatttggtcctttcatttcccggaaagctatctgaaaccagaaactttccctctccaagaatccttactccttcttcagcacagtaagaaaccaaatca |
54727380 |
T |
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| Q |
320 |
ccagatcttacaaccttcattg-nnnnnnnnnnnnnnttccaattattttcataatttctcaagattatagtcctaaacaacacttaacttattcaacat |
418 |
Q |
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| T |
54727381 |
ccagatcttacaaccttcattgaaaaaaataaaaaaattccaattattttcataatttctcaagattatagtcctaaacaacacttaacttattcaacat |
54727480 |
T |
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| Q |
419 |
aacaatgtaaaacaatatgcacct |
442 |
Q |
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| T |
54727481 |
aacaatgtaaaacaatatgcacct |
54727504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 203 - 335
Target Start/End: Complemental strand, 3007387 - 3007255
Alignment:
| Q |
203 |
accttggaagtgaggcaatatttggtcctttcatttcccggaaagctatctgaaaccagaaactttccctctccaagaatccttactccttcttcagcac |
302 |
Q |
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| T |
3007387 |
acctttgatgtgagacagtatttggttctttcattgcctggaaaactatcagacaccagaaactttccttctccgagaattcttactccttcctcggcac |
3007288 |
T |
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| Q |
303 |
agtaagaaaccaaatcaccagatcttacaacct |
335 |
Q |
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| T |
3007287 |
aatatgacaccaaatcccctgatctaacaacct |
3007255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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