View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21134_low_14 (Length: 374)
Name: NF21134_low_14
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 20 - 364
Target Start/End: Original strand, 54727506 - 54727836
Alignment:
| Q |
20 |
tgtaactgcatctttcgctggctttgctatttctttgactaagcattctgcaattgcagctttgtgttctttgaggattgcagctgccttgtgaagaagt |
119 |
Q |
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| T |
54727506 |
tgtaactgcatctttcgctggctttgctatttctttgactaagcattctgcaattgcagctttgtgttctttgaggattgcagctgccttgtgaagaagt |
54727605 |
T |
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| Q |
120 |
tcagccctcttccaaagtggagtctttgcccatgacttttgtgctgcttttgctgaatccataaccttattaacttcctcttgtgaacaagctgcatgga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54727606 |
tcagccctcttccaaagtggagtctttgcccatgacttttgtgctgcttttgctgaatccataaccttattaacttcctcttgtgaacaagctgcatgga |
54727705 |
T |
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| Q |
220 |
tatcattctaagaggattagagcttattgaacacagttcttatctgttatattatttatctatcatttatcaatctagttttttatacaatcatcaaaag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54727706 |
tatcattctaagaggattagagcttattgaacacagttcttatctgttat--------------atttatcaatctagttttttatacaatcatcaaaag |
54727791 |
T |
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| Q |
320 |
aatgatctagcgttcaaatgtcatctcctttctttataacttcat |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54727792 |
aatgatctagcgttcaaatgtcatctcctttctttataacttcat |
54727836 |
T |
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