View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21134_low_17 (Length: 360)

Name: NF21134_low_17
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21134_low_17
NF21134_low_17
[»] chr8 (9 HSPs)
chr8 (17-355)||(2012449-2012787)
chr8 (239-340)||(2019246-2019347)
chr8 (223-355)||(1968048-1968181)
chr8 (183-315)||(1964450-1964581)
chr8 (234-340)||(2008849-2008956)
chr8 (242-340)||(2013396-2013494)
chr8 (239-340)||(1962465-1962566)
chr8 (243-340)||(2015863-2015960)
chr8 (242-316)||(2005493-2005567)
[»] chr3 (2 HSPs)
chr3 (176-350)||(18189366-18189541)
chr3 (108-169)||(18189278-18189339)
[»] chr1 (1 HSPs)
chr1 (239-356)||(5901644-5901761)


Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 355
Target Start/End: Complemental strand, 2012787 - 2012449
Alignment:
Q  17 tatacacgtcctcagttattgtcctatatgtatctaacaattataaggtagtgttgactatagggtgaaattctcaatattgtgttaggtagaagttgtg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2012787 tatacacgtcctcagttattgtcctatatgtatctaacaattataaggtagtgttgactatagggtgaaattctcaatattgtgttaggtagaagttgtg 2012688  T
Q  117 aaatgcagatatactggtgcataccaaaatatcttaaaaccaaactttcaaccatgaacttggctttaaaatctatacaagtctttggctaggtgagttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2012687 aaatgcagatatactggtgcataccaaaatatcttaaaaccaaactttcaaccatgaacttggctttaaaatctatacaagtctttggctaggtgagttt 2012588  T
Q  217 cattcatgaaattggcctcaaatttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctc 316  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2012587 cattcatgaacttggcctcaaatttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcatttctc 2012488  T
Q  317 aaagttacttatccagcttcatccggacattcatctcac 355  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  2012487 aaagttacttatccagcttcatccggacattcatgtcac 2012449  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 239 - 340
Target Start/End: Complemental strand, 2019347 - 2019246
Alignment:
Q  239 tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcat 338  Q
    ||||||||| |||||| |||| ||||| |||||||||||||| || ||||| |||||| |||| |||||||||||||| ||| ||||| | |||||||||    
T  2019347 tttcatggagaaaacagttcatattgcagttgttccaggtgttggatatggccacttattcccgattcttcaattctccaagctacttgttcagcttcat 2019248  T
Q  339 cc 340  Q
    ||    
T  2019247 cc 2019246  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 223 - 355
Target Start/End: Original strand, 1968048 - 1968181
Alignment:
Q  223 tgaaattggcctcaaatttc-atggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagt 321  Q
    |||| ||| ||||||||||| ||||| |||||| |||| ||||| |||||||||||||| || ||| | || || |||||||||||||||||||| |||     
T  1968048 tgaacttgacctcaaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagtcatttggtccctattcttcaattctccaaga 1968147  T
Q  322 tacttatccagcttcatccggacattcatctcac 355  Q
     |||| | || |||||||| ||| ||||| ||||    
T  1968148 gacttgttcaacttcatccagactttcatgtcac 1968181  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 315
Target Start/End: Original strand, 1964450 - 1964581
Alignment:
Q  183 taaaatctatacaagtctttggctaggtgagtttcattcatgaaattggcctcaaatttc-atggataaaacaattcacattgccgttgttccaggtgtc 281  Q
    ||||||||||| | ||||| |||||||||| ||||||    ||| |||| ||| |||||| ||||| ||||| ||||||||||| ||||||||||||||     
T  1964450 taaaatctatataggtcttgggctaggtgactttcat----gaacttggtctctaatttccatggagaaaaccattcacattgcagttgttccaggtgtt 1964545  T
Q  282 gggtatgga--cacttagtccctattcttcaattct 315  Q
    ||||||  |  || |||||| |||||||||||||||    
T  1964546 gggtatatatccatttagtctctattcttcaattct 1964581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 340
Target Start/End: Complemental strand, 2008956 - 2008849
Alignment:
Q  234 tcaaatttc-atggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccag 332  Q
    ||||||||| ||||| |||||| |||| ||||| |||||||||||||| || ||| | || || |||||||||||||||||||| |||  |||| | |||    
T  2008956 tcaaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagccatttggtccctattcttcaattctccaagagacttgttcag 2008857  T
Q  333 cttcatcc 340  Q
    ||||||||    
T  2008856 cttcatcc 2008849  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 340
Target Start/End: Complemental strand, 2013494 - 2013396
Alignment:
Q  242 catggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcatcc 340  Q
    |||||| |||| |||||| ||||| |||||||||||||| || ||| | |||||| |||| ||||||||||| || ||| ||||| | |||||||||||    
T  2013494 catggagaaaaaaattcatattgcagttgttccaggtgttggatatagtcacttattcccaattcttcaattttcgaagctacttgttcagcttcatcc 2013396  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 340
Target Start/End: Original strand, 1962465 - 1962566
Alignment:
Q  239 tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcat 338  Q
    ||||||||| |||||| |||| ||||| |||||||| ||||| || ||| | |||||| |||| |||||||||||||| ||  ||||| | |||||||||    
T  1962465 tttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcat 1962564  T
Q  339 cc 340  Q
    ||    
T  1962565 cc 1962566  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 340
Target Start/End: Complemental strand, 2015960 - 2015863
Alignment:
Q  243 atggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcatcc 340  Q
    ||||| ||||||||||| ||||| |||||||||||||| || ||| | || || ||| |||||||||||||||| |||  |||| | |||||||||||    
T  2015960 atggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcagcttcatcc 2015863  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 2005567 - 2005493
Alignment:
Q  242 catggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctc 316  Q
    |||||| ||||||||||| ||||| |||||||||||||| || ||| | || || ||| ||||||||||||||||    
T  2005567 catggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctc 2005493  T

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Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 176 - 350
Target Start/End: Original strand, 18189366 - 18189541
Alignment:
Q  176 ttggctttaaaatctatacaagtctttggctaggtgagtttcattcatgaaattggcctcaaatttc-atggataaaacaattcacattgccgttgttcc 274  Q
    ||||||||||||||||||||||| |||||||   ||||||||||||||||| || || ||||||||| ||||||||||||||||||||||| ||||||||    
T  18189366 ttggctttaaaatctatacaagtttttggctgcatgagtttcattcatgaacttagcatcaaatttccatggataaaacaattcacattgcagttgttcc 18189465  T
Q  275 aggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcatccggacattcat 350  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  18189466 aggtgttgggtatggacacttagtccctattcttcaattctcaaagttacttatccatcttcatccagacattcat 18189541  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 18189278 - 18189339
Alignment:
Q  108 gaagttgtgaaatgcagatatactggtgcataccaaaatatcttaaaaccaaactttcaacc 169  Q
    |||||||||||||  ||| | ||||||  ||||||||| |||||||||||||||||||||||    
T  18189278 gaagttgtgaaatatagaaacactggtttataccaaaaaatcttaaaaccaaactttcaacc 18189339  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 239 - 356
Target Start/End: Original strand, 5901644 - 5901761
Alignment:
Q  239 tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcat 338  Q
    ||||||||| ||||||||||||||||| ||| |||||||||   ||||| | || |||||| |||||||| ||||||| ||| ||||| | ||||| |||    
T  5901644 tttcatggagaaaacaattcacattgctgttattccaggtgcttggtatagccatttagtctctattcttgaattctccaagctacttgttcagctccat 5901743  T
Q  339 ccggacattcatctcact 356  Q
    || ||| ||||| |||||    
T  5901744 ccagactttcatgtcact 5901761  T

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