View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21134_low_18 (Length: 336)
Name: NF21134_low_18
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 7 - 319
Target Start/End: Original strand, 31300430 - 31300742
Alignment:
| Q |
7 |
tccaagaatatcacatttgggttgctttccgacatgaagagaagcagacaacttcgtcaagtttgttgataatgtgttaggtggtttcagacaagatagt |
106 |
Q |
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| T |
31300430 |
tccaacaatatcacatttgggttgctttccgacatgaagagaagcagacaacttcgtcaagtttgttgatactgtgttaggtggtttcagataagatagt |
31300529 |
T |
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| Q |
107 |
ctaagttatggaatagattattttgaggagaaagacaaaaggatggtggccattttaagtggctccctataataaggatacaatgaatgtttcgtgagat |
206 |
Q |
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| T |
31300530 |
ctgagttatggaatagattattttgaggagaaagacaaaaggatggtggccatctgaagtggctccctataataaggatacaatgaatgtttcgtgagat |
31300629 |
T |
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| Q |
207 |
aaacacacataaaagtcacctccctccatgtcgaccaccatgtttatttaagcttcccttgtgcctgaagttgacattgttcttaggtgcgttaaatcct |
306 |
Q |
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| T |
31300630 |
aaacacacataaaagtcacctccctccatgtcgaccaccatgtttatttaagcttcccttgtgcctgaagttgacactgttcttaggtgcgttaaatcct |
31300729 |
T |
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| Q |
307 |
ttcaaaaaggaac |
319 |
Q |
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| T |
31300730 |
ttcaaaaaggaac |
31300742 |
T |
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Back To:
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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 53388975 - 53388920
Alignment:
| Q |
227 |
tccctccatgtcgaccaccatgtttatttaagcttcccttgtgcctgaagttgaca |
282 |
Q |
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| T |
53388975 |
tccctctatgtcgacctccatgttttatgaagcttcccttgtggctgaagttgaca |
53388920 |
T |
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