View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21134_low_19 (Length: 318)
Name: NF21134_low_19
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 40593470 - 40593165
Alignment:
| Q |
1 |
ttggtctcttcggataagtctggctccttccggtagatccaaactactttgataaattagtaacgctttatttatttactaatacaattattacacgttt |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40593470 |
ttggtctcttcggagaagtctggctccttccggtagatccaaactcctttgataaattagtaacgctttatttatttactaatacaattattacacgttt |
40593371 |
T |
|
| Q |
101 |
agttaattattacacattgtttaggttaagtctattgtggataaataagatagtgcttattttctatcattatatcttccttgatccaaccctggaactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40593370 |
agttaattattacacattgtttaggttaagtctactgtggataaataagatagtgcttattttctatcattatatcttccttgatccaaccctggaactt |
40593271 |
T |
|
| Q |
201 |
attgatttaatagtgaaaatatacatgttcatggtactacaccgacctcattagcttgtgcagaacaaaagtaacttacaacttattgcatatatatctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40593270 |
attgatttaatagtgaaaatatacatgttcgtggtactacaccgacctcattagcttgtgcagaacaaaagtaacttacaacttattgcatatatatctt |
40593171 |
T |
|
| Q |
301 |
cttctc |
306 |
Q |
| |
|
|||||| |
|
|
| T |
40593170 |
cttctc |
40593165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University