View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21134_low_2 (Length: 620)
Name: NF21134_low_2
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 59 - 609
Target Start/End: Original strand, 11662602 - 11663156
Alignment:
| Q |
59 |
cactaggccaacatctttatgacttaactaaagaaatcataatcatgctgtttcttttcctttataaacactaatactaataataatttttcttatttga |
158 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11662602 |
cactaggccaacatctttatgacttaactaaagaaatcataatcatgctgtttcttttcctttataaacactaatactaataataatttttcttatttga |
11662701 |
T |
|
| Q |
159 |
gacaaacaacagcataaaacagagaatgaaaaatgaccaattttctcaaataagcaagaactttaacaaaacccatataac-aaaaacacaaattaatca |
257 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11662702 |
gacaaacaacagcataaaacagagaatgaaaaatgaccaattttcccaaataagcaagaactttaacaaaacccatataacaaaaaacacaaattaatca |
11662801 |
T |
|
| Q |
258 |
aaacccatttcaagaattaccttaaatcgctcaaattcaatgtctttatcatcagtatcgaaaagagtaggagcaggtctttgagaaagctctcgaggag |
357 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11662802 |
aaaccgatttcaagaattaccttaaatcgctcaaattcaatgtctttatcatgagtatcgaaaagagtaggagcaggtctttgagaaagctctcgaggag |
11662901 |
T |
|
| Q |
358 |
gtgagaaaccaccagaaacaaacggtttcggcgnnnnnnnnnnnnnnnnnnnnnngaattgatgatggttagagaaagaagtgggagaagaagaagggtt |
457 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11662902 |
gtgagaaaccaccagaaacaaacggtttcggcggttgttgttgttgttgttgttggaattgatgatggttagagaaagaagtggaagaagaagaagggtt |
11663001 |
T |
|
| Q |
458 |
tgtagggttgggtttgaaactggaagagatagcatcggtttcagcttcaataacgctgttgaggaaatcttcgtcccattcatcgcctaagatatcatcg |
557 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11663002 |
tgtagggtggggtttgaaactggaagagatagcatcggtttcagcttcaataacgctgttgaggaaatcttcgtcccattcatcgcctaagatatcatcg |
11663101 |
T |
|
| Q |
558 |
gtgatgttga---tgttgttgtcgttcatcatcatcgatgttcttcgtcgacctt |
609 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
11663102 |
gtgatgttgatgttgttgttgttgttcatcatcatcgatgttcttcgtcgacctt |
11663156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 210 - 345
Target Start/End: Original strand, 1015791 - 1015925
Alignment:
| Q |
210 |
aagcaagaactttaacaaaacccatataacaaaaacacaaattaatcaaaacccatttcaagaattaccttaaatcgctcaaattcaatgtctttatcat |
309 |
Q |
| |
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|||||| || ||| ||||||||||| |||||||| |||||||| |||||||| |||||||||||| ||||||||| |||||| |||||||| |||||||| |
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| T |
1015791 |
aagcaacaattttgacaaaacccatctaacaaaa-cacaaattcatcaaaactcatttcaagaatcaccttaaattgctcaatttcaatgtttttatcat |
1015889 |
T |
|
| Q |
310 |
cagtatcgaaaagagtaggagcaggtctttgagaaa |
345 |
Q |
| |
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|| | |||||| |||||||||||||||||||||| |
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|
| T |
1015890 |
cataactgaaaagggtaggagcaggtctttgagaaa |
1015925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 45113623 - 45113728
Alignment:
| Q |
241 |
aaaacacaaattaatcaaaacccatttcaagaattaccttaaatcgctcaaattcaatgtctttatcatcagtatcgaaaagagtaggagcaggtctttg |
340 |
Q |
| |
|
|||||||||||| |||||||| |||||||| ||| | ||||||| ||||||||||||||| |||||||||| | |||||| ||||||||| ||||||| |
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| T |
45113623 |
aaaacacaaattcatcaaaactcatttcaataatcaacttaaattgctcaaattcaatgtttttatcatcatagttgaaaagggtaggagcaagtctttg |
45113722 |
T |
|
| Q |
341 |
agaaag |
346 |
Q |
| |
|
|||||| |
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|
| T |
45113723 |
agaaag |
45113728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 224 - 334
Target Start/End: Original strand, 11288240 - 11288349
Alignment:
| Q |
224 |
acaaaacccatataacaaaaacacaaattaatcaaaacccatttcaagaattaccttaaatcgctcaaattcaatgtctttatcatcagtatcgaaaaga |
323 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| |||| |||||||| ||| || ||||| |||||||||||| || |||||||||| | |||||| |
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| T |
11288240 |
acaaaacccatataacaaaa-cacaaattcatctaaactcatttcaataatcacattaaagtgctcaaattcaacgtttttatcatcatagttgaaaagg |
11288338 |
T |
|
| Q |
324 |
gtaggagcagg |
334 |
Q |
| |
|
||||||||||| |
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|
| T |
11288339 |
gtaggagcagg |
11288349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 38116208 - 38116313
Alignment:
| Q |
241 |
aaaacacaaattaatcaaaacccatttcaagaattaccttaaatcgctcaaattcaatgtctttatcatcagtatcgaaaagagtaggagcaggtctttg |
340 |
Q |
| |
|
|||||||||||| ||||||| |||||||| ||| | ||||||| ||||||||||||||| |||||||||| | |||||| ||||||||||||||||| |
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| T |
38116208 |
aaaacacaaattcttcaaaactcatttcaataatcatcttaaattgctcaaattcaatgtttttatcatcatagttgaaaagggtaggagcaggtctttg |
38116307 |
T |
|
| Q |
341 |
agaaag |
346 |
Q |
| |
|
|||||| |
|
|
| T |
38116308 |
agaaag |
38116313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 241 - 335
Target Start/End: Original strand, 22776063 - 22776157
Alignment:
| Q |
241 |
aaaacacaaattaatcaaaacccatttcaagaattaccttaaatcgctcaaattcaatgtctttatcatcagtatcgaaaagagtaggagcaggt |
335 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| ||||||||| |||||||||| |||| |||||||||| || |||||| |||||||||||| |
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| T |
22776063 |
aaaacacaaattcatcaaaacccggttcaagaatcaccttaaattgctcaaattccatgtttttatcatcataattgaaaagggtaggagcaggt |
22776157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 240 - 365
Target Start/End: Complemental strand, 31566136 - 31566017
Alignment:
| Q |
240 |
aaaaacacaaattaatcaaaacccatttcaagaattaccttaaatcgctcaaattcaatgtctttatcatcagtatcgaaaagagtaggagcaggtcttt |
339 |
Q |
| |
|
||||||||||||| | |||||| |||||| |||||| ||||| ||| |||||||| ||||||||||| ||||||||||| | |||| |||||| |
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|
| T |
31566136 |
aaaaacacaaattcgtgaaaacctatttcaggaattatcttaagtcgatcaaattcgatgtctttatc------gtcgaaaagagtggcagcaagtcttt |
31566043 |
T |
|
| Q |
340 |
gagaaagctctcgaggaggtgagaaa |
365 |
Q |
| |
|
|||||||| || |||||||||||||| |
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|
| T |
31566042 |
gagaaagcgctggaggaggtgagaaa |
31566017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 3835101 - 3835135
Alignment:
| Q |
36 |
actcctaagtcccaagcctgcaccactaggccaac |
70 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| |
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|
| T |
3835101 |
actcctaagtcccaagccttcaccactaggccaac |
3835135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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