View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21134_low_20 (Length: 301)
Name: NF21134_low_20
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_low_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 599772 - 599506
Alignment:
| Q |
16 |
atggaagtggctaagggacaatagaaaggcacacctaccacatgtggaaatttctcaattttcaactctttccattgaaagatacatatccattcaccct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
599772 |
atggaagtggctaagggacaatagaaaggcacacctaccacatgtggaaatttctcaattttcaactctttccattgaaagatacatatccattcaccct |
599673 |
T |
|
| Q |
116 |
gaattccatgccttccnnnnnnnnnnnnnnnnnnnnnngcatgttcatataaaaatagaaacgttaatttcttaggcaaaatttcaactagaaaaacaag |
215 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
599672 |
gaattccatgccttccaaaaaaattaaaaaaccaaaa-gcatgttcatataacagtagaaacgttaatttcttaggcaaaatttcaactagaaaaacaag |
599574 |
T |
|
| Q |
216 |
ggaaaacataaatattttggcatgaaactaggttttattgaaggtaatatgtaaagagactaggtttt |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
599573 |
ggaaaacataaatattttggcatgaaactaggttttattgaaggtaatatgtaaagagactaggtttt |
599506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 590645 - 590522
Alignment:
| Q |
16 |
atggaagtggctaag--ggacaatagaaaggcacacctaccac-----atgtggaaatttctcaattttcaactctttcca--ttgaaagatacatatcc |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| ||| ||| ||||| ||| |
|
|
| T |
590645 |
atggaagtggctaaaaaggacaatagaaagacacacctaccactaaacatgtggaagtttctcaattttcaactctttccattttggaaggtacat-tcc |
590547 |
T |
|
| Q |
107 |
attcaccctgaattccatgccttcc |
131 |
Q |
| |
|
|||||||||||||| ||| |||||| |
|
|
| T |
590546 |
attcaccctgaattgcataccttcc |
590522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University