View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21134_low_21 (Length: 283)

Name: NF21134_low_21
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21134_low_21
NF21134_low_21
[»] chr7 (13 HSPs)
chr7 (1-268)||(4864244-4864511)
chr7 (1-263)||(4696699-4696958)
chr7 (1-255)||(4711581-4711832)
chr7 (1-255)||(4637192-4637443)
chr7 (4-203)||(4653883-4654079)
chr7 (4-268)||(4673025-4673286)
chr7 (10-255)||(4783353-4783595)
chr7 (10-255)||(4815782-4816024)
chr7 (1-266)||(4845521-4845783)
chr7 (125-268)||(4667263-4667406)
chr7 (97-167)||(4644130-4644200)
chr7 (5-66)||(4644216-4644277)
chr7 (4-66)||(4631451-4631513)
[»] chr4 (1 HSPs)
chr4 (97-171)||(18925344-18925418)


Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 4864511 - 4864244
Alignment:
Q  1 aaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4864511 aaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattat 4864412  T
Q  101 gccttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4864411 gccttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgaca 4864312  T
Q  201 acacggactaccaagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagt 268  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4864311 acacgaactaccaagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagt 4864244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 4696699 - 4696958
Alignment:
Q  1 aaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattat 100  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||   ||  || ||||| || |||||||||||||||    
T  4696699 aaaaatcaccaaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattcc---cagcaacataaaccagtcaaatccttattat 4696795  T
Q  101 gccttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgaca 200  Q
    || |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||    
T  4696796 gctttcattaacggaatagaagttgtgtcaatgccttcttttctctattacacaaacctcagtgacccaaaatatcatttgatatcacttgacttagaca 4696895  T
Q  201 acacggactaccaagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtg 263  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4696896 acagggactaccaagttcttaacgacaaagcgttagagacggtttatagagtcaatgtgggtg 4696958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 4711581 - 4711832
Alignment:
Q  1 aaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattat 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    || || |||||||| |||||||||||||||    
T  4711581 aaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcca---aacaacataaatcattcaaatccttattat 4711677  T
Q  101 gccttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgaca 200  Q
    || |||||||| ||||| ||| | |||||||||||||||||||| ||||||||  |||| ||||||||||||||   |||||||||||||||||||||||    
T  4711678 gctttcattaacggaatcgaaattgtgtctatgccttcttttctctattacacggaccttaatgacccaaaataccttttgaaatcacttgactttgaca 4711777  T
Q  201 acacggactaccaagttcttaacgacaaagcgttagagacggtttatagagtcaa 255  Q
    ||||||| |||||| ||| |||||||||||| || || | ||| |||||||||||    
T  4711778 acacggaataccaaattcataacgacaaagctttggaaatggtatatagagtcaa 4711832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 4637443 - 4637192
Alignment:
Q  1 aaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattat 100  Q
    |||||||||||||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||    || |  ||||| ||||||||||||| ||||    
T  4637443 aaaaatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcct---aacagcataaaccaatcaaatccttgttat 4637347  T
Q  101 gccttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgaca 200  Q
    || || ||||| || || ||||| ||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||| || ||||||  ||      
T  4637346 gcttttattaacgggatcgaagttgtgtcaatgccttcttttctctattacacaaacctcaatgacccaaattactatttgaaaccagttgactcagagt 4637247  T
Q  201 acacggactaccaagttcttaacgacaaagcgttagagacggtttatagagtcaa 255  Q
    ||||||| |||| | ||| ||| |||||||| || |||| |||||||||||||||    
T  4637246 acacggaataccgaattcataaagacaaagctttggagatggtttatagagtcaa 4637192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 4 - 203
Target Start/End: Complemental strand, 4654079 - 4653883
Alignment:
Q  4 aatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgcc 103  Q
    ||||||||||||||||||||| ||| || || | ||| |||||||||||||||||||||||||   ||| || | ||| || |||||||||||||||||     
T  4654079 aatcaccaaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcc---caacaacacaaaccattcaaatccttattatgct 4653983  T
Q  104 ttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaaca 203  Q
    |||||||||||||| ||||| |||||||||||||||||||| |||||| |||||||||||| |||||| ||| | || |||||||||||||  |||||||    
T  4653982 ttcattaatggaattgaagttgtgtctatgccttcttttctctattactcaaacctcaatgccccaaattatgacttcaaatcacttgactcagacaaca 4653883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 268
Target Start/End: Complemental strand, 4673286 - 4673025
Alignment:
Q  4 aatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataat-ataaatcaatcaaatccttattatgc 102  Q
    |||||||||||||| ||| || ||||||||  | ||||||||||||||||||| |||||||||    ||  || || ||  ||||||||  | | |||||    
T  4673286 aatcaccaaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattcc----aagcatcatgaacaaatcaaatgttaaatatgc 4673191  T
Q  103 cttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaac 202  Q
     |||||||| ||||| ||| | ||||| |||||||||||||| |||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||||    
T  4673190 tttcattaacggaatcgaaattgtgtcaatgccttcttttctctattacacaaacctcagtgacccaaattatcatttgaaatcacttgacttagacaac 4673091  T
Q  203 acggactaccaagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaagt 268  Q
    ||||| |||||| ||| |||||| ||||| || || | ||||||||||||||| || |||||||||    
T  4673090 acggaataccaaattcataacgaaaaagctttggaaatggtttatagagtcaacgttggtgaaagt 4673025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 4783353 - 4783595
Alignment:
Q  10 caaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcatt 109  Q
    ||||||||||| ||| ||||||||| |||| ||||||||||||||||||||||||||   ||| || | ||| ||||  | ||||  |||||| ||||||    
T  4783353 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcc---caacaacacaaaccaattgattcctagttatgctttcatt 4783449  T
Q  110 aatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggact 209  Q
    || ||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||| | | |||  | | || | || ||  |||||||||||||| |    
T  4783450 aacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgaccaagattatcttatcaatttacctggttttgacaacacggatt 4783549  T
Q  210 accaagttcttaacgacaaagcgttagagacggtttatagagtcaa 255  Q
    | |||||||||||| ||||||| |||||||||||||||||||||||    
T  4783550 atcaagttcttaactacaaagctttagagacggtttatagagtcaa 4783595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 4815782 - 4816024
Alignment:
Q  10 caaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattatgccttcatt 109  Q
    ||||||||||| ||| ||||||||| |||| ||||||||||||||||||||||||||   ||| || | ||| ||||  | ||||  |||||| ||||||    
T  4815782 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcc---caacaacacaaaccaattgagtcctagttatgctttcatt 4815878  T
Q  110 aatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggact 209  Q
    || ||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||| | | |||  | | || | || ||  | |||||||||||| |    
T  4815879 aacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgaccaagattatcgtatcaagttacctggttctgacaacacggaat 4815978  T
Q  210 accaagttcttaacgacaaagcgttagagacggtttatagagtcaa 255  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||    
T  4815979 accaagttcttaacaacaaagctttagagacggtttatagagtcaa 4816024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 4845521 - 4845783
Alignment:
Q  1 aaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattccggccaataatataaatcaatcaaatccttattat 100  Q
    |||||| |||||||||||||||||||| |||||| |||||| ||||||||||||||||||| |||||   || || |||||  |||  ||||||| ||||    
T  4845521 aaaaattaccaaagaatattgcattcagatcaaaccaaatgggaagctaaacataactttctttccg---aacaacataaacgaattgaatcctttttat 4845617  T
Q  101 gccttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgaca 200  Q
    || ||| |||| ||||| ||||| ||||| |||||||||||||| |||||||||||||   |||||  ||| |||||||| |||| | ||| ||||||||    
T  4845618 gctttcgttaacggaatcgaagttgtgtcgatgccttcttttctctattacacaaacccagatgacttaaattattatttcaaattaattggctttgaca 4845717  T
Q  201 acacggactaccaagttcttaacgacaaagcgttagagacggtttatagagtcaatgtcggtgaaa 266  Q
    |||  || ||| || ||| ||| || ||||| || |||| |||||||||||||||||| |||||||    
T  4845718 acagagaatacgaaattcgtaatgataaagctttggagatggtttatagagtcaatgttggtgaaa 4845783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 268
Target Start/End: Complemental strand, 4667406 - 4667263
Alignment:
Q  125 gtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacggactaccaagttcttaacg 224  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||||| ||| |||||| || |||||||||||||| ||  || |||||  ||| ||||     
T  4667406 gtgtctatgccgtcttttctctattacacaaacctcagtgacccaaattatcatttgacattacttgactttgacagcaatgaataccatattcctaaca 4667307  T
Q  225 acaaagcgttagagacggtttatagagtcaatgtcggtgaaagt 268  Q
    |||||||  | |||||||||||||||||||  || |||||||||    
T  4667306 acaaagctatggagacggtttatagagtcagcgttggtgaaagt 4667263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 4644200 - 4644130
Alignment:
Q  97 ttatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacc 167  Q
    |||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||| |||||    
T  4644200 ttatgctttcattaacggaatcgaagttgtgtctatgccttcttttctctattacacaaacctcagtgacc 4644130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 4644277 - 4644216
Alignment:
Q  5 atcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattcc 66  Q
    |||| |||||| |||||||| ||||| ||| |||||||||||||||||||||||||||||||    
T  4644277 atcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattcc 4644216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 4631513 - 4631451
Alignment:
Q  4 aatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattcc 66  Q
    ||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||    
T  4631513 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 4631451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 18925344 - 18925418
Alignment:
Q  97 ttatgccttcattaatggaatagaagtcgtgtctatgccttcttttctatattacacaaacctcaatgacccaaa 171  Q
    |||||| ||||| || ||||| ||  ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  18925344 ttatgctttcatcaacggaattgagatcgtgtccatgccttcttttctctattacacaaacctcaatgactcaaa 18925418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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