View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21134_low_23 (Length: 264)

Name: NF21134_low_23
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21134_low_23
NF21134_low_23
[»] chr5 (12 HSPs)
chr5 (18-253)||(15083628-15083861)
chr5 (21-253)||(15428790-15429022)
chr5 (33-253)||(16397350-16397570)
chr5 (45-238)||(15331873-15332067)
chr5 (127-246)||(16403949-16404068)
chr5 (31-253)||(15357952-15358174)
chr5 (45-253)||(15336310-15336518)
chr5 (126-237)||(17928289-17928400)
chr5 (18-107)||(16414821-16414910)
chr5 (45-249)||(15347687-15347891)
chr5 (113-232)||(15452724-15452843)
chr5 (45-105)||(17928427-17928487)
[»] chr3 (1 HSPs)
chr3 (144-253)||(8187783-8187892)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 15083861 - 15083628
Alignment:
Q  18 gaaagggtggtccaacactttgagtccagaatgtgggtgtgtgtttcagaagattttagtttgaagcgaatgactaaagcaatcatagaagcggaaacta 117  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15083861 gaaagggtggtccaacact--gagtccagaatgtgggtgtgtgtttcagaagattttagtttgaagcgaatgactaaagcaatcatcgaagcggaaacta 15083764  T
Q  118 agaagtcatgtgaagatttggatctagagccactacaaagaagacttcaagatctactacaaggaaaaagatttttgcttgtattggatgacgtctggga 217  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15083763 agaactcatgtgaagatttggatctagaaccactacaaagaagacttcaacatctactacaaggaaaaagatttttgcttgtattggatgacgtttggga 15083664  T
Q  218 cgataaacaagagaattggcagagattgagatctgt 253  Q
    ||||||||||||||||||||||||||||||||||||    
T  15083663 cgataaacaagagaattggcagagattgagatctgt 15083628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 15428790 - 15429022
Alignment:
Q  21 agggtggtccaacactttgagtccagaatgtgggtgtgtgtttcagaagattttagtttgaagcgaatgactaaagcaatcatagaagcggaaactaaga 120  Q
    ||||||||| ||||||||||| | ||||| ||||| ||||||||||||||||||||||||||| ||||||||||| | || || ||||||  | ||||||    
T  15428790 agggtggtcaaacactttgagccgagaatttgggtttgtgtttcagaagattttagtttgaagagaatgactaaaacgataatcgaagcgacatctaaga 15428889  T
Q  121 agtcatgtgaagatttggatctagagccactacaaagaagacttcaagatctactacaaggaaaaagatttttgcttgtattggatgacgtctgggacga 220  Q
    |||||||||    ||||||||||||| ||||||||| |||||||||||| || || ||||||||||||||||||||||||||||| || || |||||||     
T  15428890 agtcatgtggtattttggatctagagacactacaaacaagacttcaagacctgcttcaaggaaaaagatttttgcttgtattggacgatgtatgggacgt 15428989  T
Q  221 taaacaagagaattggcagagattgagatctgt 253  Q
    |||||||||||||||||| | ||||||||||||    
T  15428990 taaacaagagaattggcaaaaattgagatctgt 15429022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 33 - 253
Target Start/End: Complemental strand, 16397570 - 16397350
Alignment:
Q  33 cactttgagtccagaatgtgggtgtgtgtttcagaagattttagtttgaagcgaatgactaaagcaatcatagaagcggaaactaagaagtcatgtgaag 132  Q
    ||||||||||  | ||| |||||||| |||||||||||||| | | | ||  ||||||| ||||| |||||||||| || |||||||||||| ||||| |    
T  16397570 cactttgagttaaaaatttgggtgtgcgtttcagaagatttcactctaaaaagaatgacaaaagccatcatagaaggggcaactaagaagtcctgtgagg 16397471  T
Q  133 atttggatctagagccactacaaagaagacttcaagatctactacaaggaaaaagatttttgcttgtattggatgacgtctgggacgataaacaagagaa 232  Q
    |||| |||||||||| ||| ||||||| ||||||||||||||| | | |||||||||  |||||||| ||||||||||| ||| | || |||||||||||    
T  16397470 atttagatctagagctacttcaaagaaaacttcaagatctacttcgaagaaaaagatacttgcttgttttggatgacgtgtggaatgacaaacaagagaa 16397371  T
Q  233 ttggcagagattgagatctgt 253  Q
    |||||| ||||||| ||||||    
T  16397370 ttggcaaagattgaaatctgt 16397350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 238
Target Start/End: Complemental strand, 15332067 - 15331873
Alignment:
Q  45 agaatgtgggtgtgtgtttcagaagattttagtttgaagcgaatgacta-aagcaatcatagaagcggaaactaagaagtcatgtgaagatttggatcta 143  Q
    ||||||||||||||||||||||| ||||||||| | ||  ||||||||| ||||| |||| ||||| | ||||||||| || ||||| |||||||||||     
T  15332067 agaatgtgggtgtgtgtttcagatgattttagtatcaaaagaatgactagaagca-tcattgaagctgcaactaagaaatcttgtgatgatttggatctt 15331969  T
Q  144 gagccactacaaagaagacttc-aagatctactacaaggaaaaagatttttgcttgtattggatgacgtctgggacgataaacaagagaattggca 238  Q
    |||||||||||||||| ||||| |||||||| | ||| |||||| || ||||||||| || ||||| || ||| | || ||||||||||| |||||    
T  15331968 gagccactacaaagaaaacttcaaagatctattgcaaagaaaaaaatatttgcttgttttagatgatgtgtggaatgaaaaacaagagaaatggca 15331873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 246
Target Start/End: Complemental strand, 16404068 - 16403949
Alignment:
Q  127 gtgaagatttggatctagagccactacaaagaagacttcaagatctactacaaggaaaaagatttttgcttgtattggatgacgtctgggacgataaaca 226  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||| | | ||||||||| ||||||||| ||||||||| | ||| || | |||||    
T  16404068 gtgaggatttggatctagagctactacaaaaaagacttcaagttctacttcgaagaaaaagatatttgcttgttttggatgacttgtggaaccaaaaaca 16403969  T
Q  227 agagaattggcagagattga 246  Q
    |||| |||||| ||||||||    
T  16403968 agagtattggctgagattga 16403949  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 253
Target Start/End: Complemental strand, 15358174 - 15357952
Alignment:
Q  31 aacactttgagtccagaatgtgggtgtgtgtttcagaagattttagtttgaagcgaatgactaaagcaatcatagaagcggaaactaagaagtcatgtga 130  Q
    |||||||||||   ||||| ||||| ||||||||||||||||| ||||||||| ||||||| ||||  ||||||||||| | | ||    |  | |||||    
T  15358174 aacactttgagctaagaatttgggtatgtgtttcagaagatttcagtttgaagagaatgacaaaaggcatcatagaagctgcatctggccatgcttgtga 15358075  T
Q  131 agatttggatctagagccactacaaagaagacttcaagatctactacaaggaaaaagatttttgcttgtattggatgacgtctgggacgataaacaagag 230  Q
     ||||| |||||||||||  | ||||||| |||    ||| | |||| | ||||||||| |||||| || |||||||| || ||||| |||  |||||||    
T  15358074 ggatttagatctagagccgttgcaaagaaaactgttggatttgctacgaagaaaaagatatttgctggtgttggatgatgtatgggatgatggacaagag 15357975  T
Q  231 aattggcagagattgagatctgt 253  Q
    |||||||||||||||| ||||||    
T  15357974 aattggcagagattgaaatctgt 15357952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 253
Target Start/End: Complemental strand, 15336518 - 15336310
Alignment:
Q  45 agaatgtgggtgtgtgtttcagaagattttagtttgaagcgaatgactaaagcaatcatagaagcggaaactaagaagtcatgtgaagatttggatctag 144  Q
    ||||| ||||| ||||||||||||||||| ||||||||  ||||||| ||||| ||||||||| | | | ||    |  | ||||| || || |||||||    
T  15336518 agaatttgggtatgtgtttcagaagatttcagtttgaaaagaatgacaaaagccatcatagaatctgcatctggtcatgcttgtgaggaattagatctag 15336419  T
Q  145 agccactacaaagaagacttcaagatctactacaaggaaaaagatttttgcttgtattggatgacgtctgggacgataaacaagagaattggcagagatt 244  Q
    ||||  | |||||||  |||   ||| | |||||| ||||||||| ||||||||| |||||||| || |||||||| |||  |||||||||||| |||||    
T  15336418 agccgttgcaaagaaagcttttggatttgctacaaagaaaaagatatttgcttgtgttggatgatgtgtgggacgacaaatcagagaattggcaaagatt 15336319  T
Q  245 gagatctgt 253  Q
    |||||||||    
T  15336318 gagatctgt 15336310  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 237
Target Start/End: Complemental strand, 17928400 - 17928289
Alignment:
Q  126 tgtgaagatttggatctagagccactacaaagaagacttcaagatctactacaaggaaaaagatttttgcttgtattggatgacgtctgggacgataaac 225  Q
    ||||| ||||| ||||||||||| |||||||||||||| ||||| ||||| | | ||||||||| ||||||||| ||||||||  | ||||| ||  |||    
T  17928400 tgtgaggatttagatctagagcccctacaaagaagactgcaagagctacttcgaagaaaaagatatttgcttgttttggatgatttgtgggatgaggaac 17928301  T
Q  226 aagagaattggc 237  Q
    ||||||||||||    
T  17928300 aagagaattggc 17928289  T

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Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 16414910 - 16414821
Alignment:
Q  18 gaaagggtggtccaacactttgagtccagaatgtgggtgtgtgtttcagaagattttagtttgaagcgaatgactaaagcaatcatagaa 107  Q
    |||||||| ||| | |||||||||   ||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||| |||||||||    
T  16414910 gaaagggtagtcaaccactttgagctaagaatttgggtatgtgtttcagaagattttagtttgaagagaatgacaaaagccatcatagaa 16414821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 249
Target Start/End: Complemental strand, 15347891 - 15347687
Alignment:
Q  45 agaatgtgggtgtgtgtttcagaagattttagtttgaagcgaatgactaaagcaatcatagaagcggaaactaagaagtcatgtgaagatttggatctag 144  Q
    ||||| ||||| || |||||||||||||| ||||||||| ||||||| ||||| ||||||||| |   | ||    |  | ||||| ||||| || ||||    
T  15347891 agaatttgggtatgcgtttcagaagatttcagtttgaagagaatgacaaaagccatcatagaatctacatctggtcatgcttgtgaggatttagagctag 15347792  T
Q  145 agccactacaaagaagacttcaagatctactacaaggaaaaagatttttgcttgtattggatgacgtctgggacgataaacaagagaattggcagagatt 244  Q
    |||| || ||||||| ||||  | || | || ||| ||||||||| |||||| || |||||||| || ||||||||  | ||||||||||||||||||||    
T  15347791 agccgctgcaaagaaaacttttaaatttgctgcaaagaaaaagatatttgctggtgttggatgatgtgtgggacgacgaccaagagaattggcagagatt 15347692  T
Q  245 gagat 249  Q
    |||||    
T  15347691 gagat 15347687  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 15452724 - 15452843
Alignment:
Q  113 aactaagaagtcatgtgaagatttggatctagagccactacaaagaagacttcaagatctactacaaggaaaaagatttttgcttgtattggatgacgtc 212  Q
    |||||||||||| ||| | ||||||||||||||| ||||||||| || ||||||| |  |||| |    |||||||| ||||||  | |||||||| ||     
T  15452724 aactaagaagtcttgtaaggatttggatctagagacactacaaataaaacttcaaaaggtacttcgtacaaaaagatatttgctaattttggatgatgtg 15452823  T
Q  213 tgggacgataaacaagagaa 232  Q
    ||| | ||||||||||||||    
T  15452824 tggaatgataaacaagagaa 15452843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 17928487 - 17928427
Alignment:
Q  45 agaatgtgggtgtgtgtttcagaagattttagtttgaagcgaatgactaaagcaatcatag 105  Q
    ||||| ||||||| ||||||||||||||| ||| ||||| ||||||| ||||  |||||||    
T  17928487 agaatttgggtgtctgtttcagaagatttcagtctgaagagaatgacaaaagttatcatag 17928427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 253
Target Start/End: Complemental strand, 8187892 - 8187783
Alignment:
Q  144 gagccactacaaagaagacttcaagatctactacaaggaaaaagatttttgcttgtattggatgacgtctgggacgataaacaagagaattggcagagat 243  Q
    |||||||||||||||||||||  |||  || ||||| ||||||||| |||||| || ||||| || || ||||| ||| ||||||  || |||||||| |    
T  8187892 gagccactacaaagaagacttgtagaaatattacaaagaaaaagatatttgctcgttttggacgatgtgtgggatgatgaacaaggaaactggcagaggt 8187793  T
Q  244 tgagatctgt 253  Q
    ||| ||||||    
T  8187792 tgaaatctgt 8187783  T

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