View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21134_low_28 (Length: 241)
Name: NF21134_low_28
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 27746244 - 27746021
Alignment:
| Q |
1 |
ttccacaattaatacagagaattacaatactatgtttaactccattttttccggtatccattagatgttgtttaccatagactagggcagtgctaacctg |
100 |
Q |
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| T |
27746244 |
ttccacaattaatactgcgaattacaatactatgtttaactccattttttccggtatccattagatgttgtttaccatagactagggcagtgctaacctg |
27746145 |
T |
|
| Q |
101 |
ctcatcagtaaatttccatctcaaggtcctcttgcgaagggggtcatcatcatcccaagtaaaatcaactttactgtgctgaagtgctcgaggaccgaaa |
200 |
Q |
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| T |
27746144 |
ctcatcagtaaatttccgtctcaaggtccttttgcgaagggggtcatcatcatcccaagtaaaatcaactttactgtgctgaagtgctcgaggaccgaaa |
27746045 |
T |
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| Q |
201 |
tctttgactacgtagtttgcaggt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
27746044 |
tctttgactacgtagtttgcaggt |
27746021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 38528381 - 38528470
Alignment:
| Q |
135 |
cgaagggggtcatcatcatcccaagtaaaatcaactttactgtgctgaagtgctcgaggaccgaaatctttgactacgtagtttgcaggt |
224 |
Q |
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| T |
38528381 |
cgaagaggttcatcctcatcccaagtaagttcaactttactgtgctgaagtgcccgagaatagaaatctttgttctcgtagtttgcaggt |
38528470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 49514664 - 49514451
Alignment:
| Q |
1 |
ttccacaattaatacagagaattacaatactatgtttaactccattttttccggtatccattagatgttgtttaccatagactagggcagtgctaacctg |
100 |
Q |
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|||||||||||||| || ||||||||||||||| ||| || ||||||||| | ||||||| ||||||| |||||||| ||||||||||||| ||||| |
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| T |
49514664 |
ttccacaattaatatagtgaattacaatactatattttaccccattttttatgttatccatcagatgtt---taccataggctagggcagtgctgacctg |
49514568 |
T |
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| Q |
101 |
ctcatcagtaaatttccatctcaaggtcctcttgcgaagggggtcatcatcatcccaagtaaaatcaactttactgtgctgaagtgctcgaggaccgaaa |
200 |
Q |
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||||||||||||||| | ||||||||||| ||||||| ||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49514567 |
ctcatcagtaaattttcgactcaaggtccttttgcgaaagggatcatcatcctcccaatcaaaatcaactttactgtgctgaagtgctcgaggaccgaaa |
49514468 |
T |
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| Q |
201 |
tctttgactacgtagtt |
217 |
Q |
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||||||||||||||||| |
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| T |
49514467 |
tctttgactacgtagtt |
49514451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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