View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21134_low_29 (Length: 238)
Name: NF21134_low_29
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 37715603 - 37715422
Alignment:
| Q |
38 |
ctagtgataacttacgataaaagctagccattagtaattaatattatcgcgtctaatttgttaattaaggtaccaactatagatatgcagtggcaccatg |
137 |
Q |
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| T |
37715603 |
ctagtgataacttacgataaaagctagccattagtaattaatattatcgcgtctaatttgttaattaaggtaccaactatagatatgcagtggcaccatg |
37715504 |
T |
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| Q |
138 |
aacctgaaacatacattggttactcatgccagcacaagagtaagacagtgcatctccaaataatgtaaagccgtgtcttctg |
219 |
Q |
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| T |
37715503 |
aacatgaaacatacattggttactcatgccagcacaagagtaagacagtgcatctccaaataatgtaaagccgtgtcttctg |
37715422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 216
Target Start/End: Complemental strand, 37709178 - 37709070
Alignment:
| Q |
112 |
aactatagatatgcagtggcaccatgaacctgaaacatacattggtt----actcatgccagcacaagagtaagacagtgcatctccaaataatgtaaag |
207 |
Q |
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| T |
37709178 |
aactatatatatgcagtggcgccaagaacatgacacatacattgcttgtttactcatgccagcacaagagtaagacagtgcatctccaaataatgtaaag |
37709079 |
T |
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| Q |
208 |
ccgtgtctt |
216 |
Q |
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| T |
37709078 |
ccgtgtctt |
37709070 |
T |
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