View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21134_low_6 (Length: 485)

Name: NF21134_low_6
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21134_low_6
NF21134_low_6
[»] chr8 (8 HSPs)
chr8 (28-467)||(45547550-45548000)
chr8 (28-125)||(24504057-24504154)
chr8 (28-126)||(45540318-45540413)
chr8 (28-108)||(13089766-13089850)
chr8 (28-124)||(8444263-8444356)
chr8 (28-115)||(24581449-24581536)
chr8 (28-115)||(10230104-10230191)
chr8 (28-92)||(4034301-4034365)
[»] chr2 (9 HSPs)
chr2 (28-126)||(2702258-2702356)
chr2 (28-125)||(12410790-12410887)
chr2 (28-125)||(12422850-12422947)
chr2 (28-110)||(27271658-27271740)
chr2 (28-125)||(6764423-6764520)
chr2 (28-125)||(37647968-37648065)
chr2 (28-117)||(11031809-11031898)
chr2 (35-115)||(34394492-34394572)
chr2 (28-105)||(7900954-7901031)
[»] chr7 (8 HSPs)
chr7 (28-125)||(28782015-28782112)
chr7 (28-126)||(1032222-1032320)
chr7 (28-125)||(9948933-9949030)
chr7 (28-112)||(11621380-11621464)
chr7 (28-125)||(9942602-9942699)
chr7 (28-108)||(40871302-40871382)
chr7 (30-108)||(12622906-12622984)
chr7 (35-115)||(17193893-17193972)
[»] chr4 (10 HSPs)
chr4 (28-125)||(43499300-43499397)
chr4 (28-126)||(39059723-39059821)
chr4 (31-108)||(37870649-37870726)
chr4 (29-124)||(36651742-36651837)
chr4 (28-126)||(9896508-9896606)
chr4 (31-125)||(7743575-7743669)
chr4 (31-125)||(42718574-42718669)
chr4 (28-117)||(23106753-23106842)
chr4 (49-115)||(54898909-54898975)
chr4 (28-100)||(48640764-48640836)
[»] chr1 (8 HSPs)
chr1 (28-117)||(19227887-19227976)
chr1 (28-125)||(33766359-33766456)
chr1 (28-125)||(51534478-51534575)
chr1 (28-116)||(4532087-4532175)
chr1 (28-108)||(34549383-34549463)
chr1 (28-108)||(45432374-45432454)
chr1 (35-111)||(33936450-33936526)
chr1 (28-125)||(13182647-13182744)
[»] chr5 (5 HSPs)
chr5 (28-121)||(19021396-19021489)
chr5 (28-124)||(22639563-22639659)
chr5 (28-125)||(39143220-39143317)
chr5 (28-125)||(6537080-6537176)
chr5 (35-94)||(926759-926818)
[»] scaffold0300 (1 HSPs)
scaffold0300 (28-124)||(9581-9677)
[»] scaffold0041 (1 HSPs)
scaffold0041 (28-108)||(94900-94980)
[»] chr6 (5 HSPs)
chr6 (28-108)||(12912248-12912328)
chr6 (29-117)||(24393921-24394009)
chr6 (29-108)||(165531-165610)
chr6 (35-117)||(18972621-18972703)
chr6 (28-101)||(6029356-6029429)
[»] scaffold0037 (1 HSPs)
scaffold0037 (28-108)||(997-1077)
[»] scaffold0074 (1 HSPs)
scaffold0074 (28-113)||(23809-23894)
[»] chr3 (2 HSPs)
chr3 (35-100)||(50642392-50642457)
chr3 (49-105)||(20406403-20406459)


Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 28 - 467
Target Start/End: Complemental strand, 45548000 - 45547550
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaaca 127  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45548000 aagaaactaaaatggattaaattactgaaagcctggagatttcagcacaaggagtgccaaaaccccagctgaaagagtcaattacaagaatgccaaaaca 45547901  T
Q  128 ggaataaaaaagaaagctaccc------gtaaatattcccaagcatggtaaagggatattatcggagatttagttgaacaaaatataacatcagatttcc 221  Q
    |||| |||||||||||||||||      ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45547900 ggaacaaaaaagaaagctaccctgttacgtaaatattcccaagcaaggtaaagggatattatcggagatttagttgaacaaaatataacatcagatttcc 45547801  T
Q  222 catggccaaaaccggaacnnnnnnnnnn-----ctaccctgttacgtaatatttcccaagcaacgcagatgattgatagacataatcgtctcgcaaagaa 316  Q
    ||||||||||||  |||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45547800 catggccaaaacatgaagaaaaaaaaaagaaagctaccctgttacgtaatatttcccaagcaacgcagatgattgatagacataatcgtctcgcaaagaa 45547701  T
Q  317 tttcagaaaagttcgtgatttagttgaacaaaatataacttctgatttttgtttgaggttgacgagaaatcgttcaaaggatgctaggatgcacaacata 416  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45547700 tttcagaaaagttcgtgatttagttgaacaaaatgtaacatctgatttttgtttgaggttgacgagaaatcgttcaaaggatgctaggatgcacaacata 45547601  T
Q  417 ccagaagttgatgaggtggcagctctaattgtcggagatactgacagtata 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45547600 ccagaagttgatgaggtggcagctctaattgtcggagatactgacagtata 45547550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 24504154 - 24504057
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaa 125  Q
    ||||||||||||||||||||   ||||||||  | |||||||||||||||||| |||||||||| ||||| |||||||||||||||||  ||||||||    
T  24504154 aagaaactaaaatggattaaaaaactgaaagcatagagatttcagcacaaggaatgccaaaacctcagctaaaagagtcaattacaagtgtgccaaaa 24504057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 45540413 - 45540318
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaac 126  Q
    |||||||||||| ||||||| |||||||||| |   ||||||||||||||||| ||||||||||||| || |||||||||||| ||||||||| |||||    
T  45540413 aagaaactaaaacggattaaattactgaaagcc---agatttcagcacaaggaatgccaaaaccccaactaaaagagtcaattgcaagaatgctaaaac 45540318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 13089766 - 13089850
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggat----tgccaaaaccccagctgaaagagtcaa 108  Q
    ||||| |||||||||||||  ||||| |||| |||||||||||||||||||||     |||||||||||||||||||||||||||    
T  13089766 aagaagctaaaatggattatattactaaaagtctggagatttcagcacaaggaaggagtgccaaaaccccagctgaaagagtcaa 13089850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 8444263 - 8444356
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaa 124  Q
    ||||||||||||||||||||  || |   || || ||||||||||||||| || |||||||||||||| | |||||||||||||||||| |||||||    
T  8444263 aagaaactaaaatggattaaaataat---agcctagagatttcagcacaaagagtgccaaaaccccagttaaaagagtcaattacaagagtgccaaa 8444356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 24581449 - 24581536
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaag 115  Q
    ||||| |||||||| ||||  ||| |||||| ||| | ||||||| | ||||| || ||||||||||||||||||| |||||||||||    
T  24581449 aagaagctaaaatgaattatattattgaaagtctgaatatttcagtataaggagtgtcaaaaccccagctgaaagaatcaattacaag 24581536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 10230104 - 10230191
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaag 115  Q
    ||||||||||||| |||||| | | |||||| ||||||||||||||| ||| | || |||| |  || || |||||||||||||||||    
T  10230104 aagaaactaaaattgattaaatcaatgaaagtctggagatttcagcataagaagtgtcaaagcttcaactaaaagagtcaattacaag 10230191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 4034301 - 4034365
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccc 92  Q
    ||||| |||||||| ||||  ||||| |||| ||| |||||| |||||||||| |||||||||||    
T  4034301 aagaagctaaaatgaattatattactaaaagtctgaagattttagcacaaggagtgccaaaaccc 4034365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 2702258 - 2702356
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaac 126  Q
    ||||||||||||||||||||  ||||||||| ||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2702258 aagaaactaaaatggattaaaatactgaaagcctcaagatttcagcacaaggagtgccaaaaccccagctgaaagagtcaattacaagaatgccaaaac 2702356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 12410887 - 12410790
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaa 125  Q
    ||||||||||||||||||||  ||||||||| |||||||||||| ||||| || || ||||||||||||| |||||||||||||||||| ||||||||    
T  12410887 aagaaactaaaatggattaaaatactgaaagcctggagatttcatcacaaagagtgacaaaaccccagctaaaagagtcaattacaagagtgccaaaa 12410790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 12422947 - 12422850
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaa 125  Q
    ||||||||||||||||||||  ||||||||| |||||||||||| ||||| || || ||||||||||||| |||||||||||||||||| ||||||||    
T  12422947 aagaaactaaaatggattaaaatactgaaagcctggagatttcatcacaaagagtgacaaaaccccagctaaaagagtcaattacaagagtgccaaaa 12422850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 27271740 - 27271658
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaatt 110  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||||||||||| || |||||| |||||||||||||||||||    
T  27271740 aagaaactaaaatagattaaattactgaaagcctggagatttcagcacaaggagtgtcaaaactccagctgaaagagtcaatt 27271658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 6764520 - 6764423
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaa 125  Q
    ||||||||||||||||||||  |||||||||   ||||||||||||| ||||| || ||||||||||||| |||||||||||||||||| ||||||||    
T  6764520 aagaaactaaaatggattaaaatactgaaagctcggagatttcagcataaggagtgtcaaaaccccagctaaaagagtcaattacaagagtgccaaaa 6764423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 37648065 - 37647968
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaa 125  Q
    |||||| |||||||||||||  |||||||||  |||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| || |||||    
T  37648065 aagaaattaaaatggattaaaatactgaaagtttggagatttcagcacaaggagtgccaaaacctcagctaaaagagtcaattacaagagtgtcaaaa 37647968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 11031898 - 11031809
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaa 117  Q
    ||||| |||||||| || |  ||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||    
T  11031898 aagaagctaaaatgaatgatattattgaaagtctggagatttcagcataaggagtgccaaaaccccagctgaaagagtcaaatacaagaa 11031809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 34394492 - 34394572
Alignment:
Q  35 taaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaag 115  Q
    ||||||| ||||  |||||||||| ||  |||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  34394492 taaaatgaattatattactgaaagcctaaagatttcaacacaaggagtgccaaaaccccagctgaaagagtcaattacaag 34394572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 7900954 - 7901031
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagt 105  Q
    ||||| |||||||| | ||  |||||||||| ||| ||||||||||| ||||  |||| ||| |||||||||||||||    
T  7900954 aagaagctaaaatgaaatatattactgaaagcctgaagatttcagcataaggtgtgccgaaaacccagctgaaagagt 7901031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 9e-34; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 28782015 - 28782112
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaa 125  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||    
T  28782015 aagaaactaaaatggattaaaatactgaaagcctggagatttcagcacaaggagtgccaaaaccccagctaaaagagtcaattacaagagtgccaaaa 28782112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 1032320 - 1032222
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaac 126  Q
    ||||||||||| |||| ||| |||||||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  1032320 aagaaactaaattggactaaattactgaaagcctggagatttcagcacagggaatgctaaaaccccagctgaaagagtcaattacaagaatgccaaaac 1032222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 9949030 - 9948933
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaa 125  Q
    ||||||||||||||||||||  ||||||||| ||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||    
T  9949030 aagaaactaaaatggattaaaatactgaaagcctgaagatttcagcacaaggagtaccaaaaccccagctaaaagagtcaattacaagagtgccaaaa 9948933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 11621464 - 11621380
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattac 112  Q
    ||||| |||||||||||||  |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11621464 aagaagctaaaatggattatattactgaaagcctggagatttcagcacaaggagtgccaaaaccccagctgaaagagtcaattac 11621380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 9942602 - 9942699
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaa 125  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||||||| || ||||||| || || ||| |||||||||||||| ||||||||    
T  9942602 aagaaactaaaatggattaaaatactgaaagtctggagatttcagcacaaggagtgtcaaaacctcaactaaaatagtcaattacaagagtgccaaaa 9942699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 40871302 - 40871382
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaa 108  Q
    ||||| |||||||||||||  ||| | |||| ||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  40871302 aagaagctaaaatggattatattattaaaagcctggagatttcagcacaaggagtgccaaaatcccagctgaaagagtcaa 40871382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 12622906 - 12622984
Alignment:
Q  30 gaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaa 108  Q
    |||||||||||||||||  |||||||||| |||||||||| |||| || || || |||||| |||  ||| ||||||||    
T  12622906 gaaactaaaatggattatattactgaaagcctggagattttagcataaagagtgtcaaaactccaattgatagagtcaa 12622984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 17193893 - 17193972
Alignment:
Q  35 taaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaag 115  Q
    ||||||| |||||  ||||||||| | ||||||||||| | ||||| || |||| ||| |||||||| |||||||||||||    
T  17193893 taaaatgtattaaaatactgaaagccgggagatttcagtataaggagtgtcaaatccc-agctgaaacagtcaattacaag 17193972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 43499397 - 43499300
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaa 125  Q
    ||||||||||||||||||||  |||||||||  |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||    
T  43499397 aagaaactaaaatggattaaaatactgaaagcttggagatttcagcacaaggagtgccaaaaccccagctaaaagagtcaattacaagagtgccaaaa 43499300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 39059723 - 39059821
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaac 126  Q
    |||||||||||||||||||| |||||||||| ||| ||| ||||||||||| | ||||||||||| |||||||||||| ||||||||||||| ||||||    
T  39059723 aagaaactaaaatggattaaattactgaaagtctgaagaattcagcacaagcagtgccaaaacccaagctgaaagagttaattacaagaatgtcaaaac 39059821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 37870649 - 37870726
Alignment:
Q  31 aaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaa 108  Q
    ||||||||||||||||  ||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37870649 aaactaaaatggattatattactcaaagtctggagatttcagcacaaggagtgccaaaaccccagctgaaagagtcaa 37870726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 36651742 - 36651837
Alignment:
Q  29 agaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaa 124  Q
    |||||||||||||||||||  ||  |||||  |||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| |||||||    
T  36651742 agaaactaaaatggattaaaatatcgaaagtttggagatttcagcacaaggagtgccaaaaccccagctaaaagagtcagttacaagagtgccaaa 36651837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 9896508 - 9896606
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaac 126  Q
    ||||||||||||||||| || ||| ||||||  |||| |||| |||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||    
T  9896508 aagaaactaaaatggataaaattagtgaaagcttggaaatttaagcacaaggagtgccaaaaccccagatgaaaaagtcaattgcaagaatgccaaaac 9896606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 7743669 - 7743575
Alignment:
Q  31 aaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaa 125  Q
    |||||||||||||||||   ||||||||  |||||||||||||||||||| |||||||||   |||| |||||||||||||||||| || |||||    
T  7743669 aaactaaaatggattaaaaaactgaaagcatggagatttcagcacaaggagtgccaaaacttaagctaaaagagtcaattacaagagtgtcaaaa 7743575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 42718669 - 42718574
Alignment:
Q  31 aaactaaaatggattaagttactgaaaggctggagatttcagca-caaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaa 125  Q
    |||||||||||||||||   |||||||| ||||||||||||||| |||||| ||| |||||||| ||| ||||||| ||||| |||| ||||||||    
T  42718669 aaactaaaatggattaaaaaactgaaagcctggagatttcagcaccaaggagtgctaaaaccccggctaaaagagttaattataagagtgccaaaa 42718574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 23106753 - 23106842
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaa 117  Q
    ||||| |||||||  ||||  ||||||||||  |||||||||||||| ||||| |||||||||||||  |||||||||||| ||||||||    
T  23106753 aagaagctaaaataaattatattactgaaagtatggagatttcagcataaggagtgccaaaaccccatttgaaagagtcaaatacaagaa 23106842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 54898909 - 54898975
Alignment:
Q  49 ttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaag 115  Q
    ||||||||||  ||||||||| || | ||||| || ||||||| |||||||||||||||||||||||    
T  54898909 ttactgaaagtttggagattttagtataaggagtgtcaaaacctcagctgaaagagtcaattacaag 54898975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 48640836 - 48640764
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaa 100  Q
    |||||||||||||||| ||  |||||||| | ||| ||||||||||||||||| ||| |||| ||||| ||||    
T  48640836 aagaaactaaaatggaatatattactgaacgcctgaagatttcagcacaaggagtgctaaaaacccagttgaa 48640764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 19227887 - 19227976
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaa 117  Q
    ||||| |||||||||||||  |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  19227887 aagaagctaaaatggattatattactgaaagcctggagatttcagcacaaggagtgccaaaaccccagctgaaagagtcaaatacaagaa 19227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 33766456 - 33766359
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaa 125  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| || |||||    
T  33766456 aagaaactaaaatggattaaaatactgaaagtctggagatttcagcacaaggagtgccaaaaccccagttaaaagagtcaattacaagagtgtcaaaa 33766359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 51534478 - 51534575
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaa 125  Q
    ||||||||||||||||||||  ||| ||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||| ||||||||    
T  51534478 aagaaactaaaatggattaaaataccgaaagcctggagatttcagcacaaggagtgccaaaacccctgctaaaagagtcaattacaagagtgccaaaa 51534575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 4532087 - 4532175
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaaga 116  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||    
T  4532087 aagaaactaaaatggattaaaatactgaaagtctggagatttcagcacaaggagtgccaaaaccccaggtaaaagagtcaattacaaga 4532175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 34549463 - 34549383
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaa 108  Q
    ||||| |||||||||||||  ||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34549463 aagaagctaaaatggattatattactaaaagtctggagatttcagcacaaggagtgccaaaaccccagctgaaagagtcaa 34549383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 45432374 - 45432454
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaa 108  Q
    ||||| |||||||||||||  ||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45432374 aagaagctaaaatggattatattactaaaagtctggagatttcagcacaaggagtgccaaaaccccagctgaaagagtcaa 45432454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 33936526 - 33936450
Alignment:
Q  35 taaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaatta 111  Q
    ||||||||||||  |||||||||| ||||||||||||| ||||||| |||||||| |||||||||||||||||||||    
T  33936526 taaaatggattatattactgaaagtctggagatttcaggacaaggagtgccaaaatcccagctgaaagagtcaatta 33936450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 13182744 - 13182647
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaa 125  Q
    |||||| |||||| ||||||  ||||||||| ||||| ||||||| | ||||| ||||||||||||| || |||||||||||||||||||| ||||||    
T  13182744 aagaaattaaaatagattaaaatactgaaagcctggaaatttcagtataaggagtgccaaaaccccaactaaaagagtcaattacaagaattccaaaa 13182647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 19021489 - 19021396
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgcc 121  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||| | ||||| |||||||||||||||| |||||||||||||||||| ||||    
T  19021489 aagaaactaaaatggattaaattattgaaagcttggagatttcagtataaggagtgccaaaaccccagctaaaagagtcaattacaagagtgcc 19021396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 22639659 - 22639563
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaa 124  Q
    ||||||||||||||||||||  |||||||||  ||||||||||| |||||||| |||||||||||||| | ||||||||| |||||||| |||||||    
T  22639659 aagaaactaaaatggattaaaatactgaaagtttggagatttcatcacaaggagtgccaaaaccccagttaaaagagtcagttacaagagtgccaaa 22639563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 39143220 - 39143317
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaa 125  Q
    ||||||||||||||||||||  ||| ||||| ||||||||||||||| ||||| |||||||| |  |||| |||||||||||||||||| ||||||||    
T  39143220 aagaaactaaaatggattaaaataccgaaagcctggagatttcagcataaggagtgccaaaatcatagctaaaagagtcaattacaagagtgccaaaa 39143317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 6537176 - 6537080
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaaa 125  Q
    ||||||||||||||||| || |||||||||  ||||||||||||||| ||||| |||||||| |  |||| |||||||||||||||| |||| |||||    
T  6537176 aagaaactaaaatggatgaaattactgaaactctggagatttcagcataaggagtgccaaaatctaagct-aaagagtcaattacaaaaatgtcaaaa 6537080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 926818 - 926759
Alignment:
Q  35 taaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaacccca 94  Q
    ||||||||||||  |||||||||   |||||||||||||||||||| |||||||||||||    
T  926818 taaaatggattatattactgaaaatttggagatttcagcacaaggagtgccaaaacccca 926759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 9677 - 9581
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaatgccaaa 124  Q
    ||||||||||||||||||||  |||| |||| ||| ||||||||||||||| | || ||||| ||||||| ||||||||| |||||||| |||||||    
T  9677 aagaaactaaaatggattaaaatactaaaagcctgaagatttcagcacaagaagtgtcaaaatcccagctaaaagagtcagttacaagagtgccaaa 9581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 94980 - 94900
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaa 108  Q
    ||||| |||||||||||||  ||| | |||| ||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  94980 aagaagctaaaatggattatattattaaaagcctggagatttcagcacaaggagtgccaaaatcccagctgaaagagtcaa 94900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 12912248 - 12912328
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaa 108  Q
    ||||| |||||||||||||  ||||| |||| ||||||||||||||||||||| || ||||||||||| ||||||||||||    
T  12912248 aagaagctaaaatggattatattactaaaagtctggagatttcagcacaaggagtgtcaaaaccccagatgaaagagtcaa 12912328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 24394009 - 24393921
Alignment:
Q  29 agaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaa 117  Q
    |||| ||||||| |||||  ||||| |||| || |||||||||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  24394009 agaagctaaaattgattatattactaaaagccttgagatttcagcacaaggagtgccaaaaccttagctgaaagagtcaattacaagaa 24393921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 165610 - 165531
Alignment:
Q  29 agaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaa 108  Q
    ||||||||||||||||||  ||| | |||| || |||||||||||||||| | || ||||||||||||||||||||||||    
T  165610 agaaactaaaatggattatattattaaaagtcttgagatttcagcacaagaagtgtcaaaaccccagctgaaagagtcaa 165531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 18972621 - 18972703
Alignment:
Q  35 taaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattacaagaa 117  Q
    |||||| |||||  ||||| |||| || |||||||||||||||||| ||||||||||  ||||||||||| ||||||||||||    
T  18972621 taaaattgattatattactaaaagccttgagatttcagcacaaggagtgccaaaaccttagctgaaagagacaattacaagaa 18972703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 6029429 - 6029356
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaa 101  Q
    ||||| |||||||||| ||  |||||||||  ||| ||||||||||||||||| |||||||| ||||| |||||    
T  6029429 aagaagctaaaatggaatatattactgaaaatctgaagatttcagcacaaggagtgccaaaatcccagttgaaa 6029356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 1077 - 997
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaa 108  Q
    ||||| |||||||||||||  ||||  |||| ||||||||||||||| ||||| || ||||||||||||||||||||||||    
T  1077 aagaagctaaaatggattatattacaaaaagtctggagatttcagcataaggagtgacaaaaccccagctgaaagagtcaa 997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 23894 - 23809
Alignment:
Q  28 aagaaactaaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagtcaattaca 113  Q
    ||||| ||||||| |||||  ||||| |||| || |||||||||||||||||| ||||||||||  || |||||||| ||||||||    
T  23894 aagaagctaaaattgattatattactaaaagccttgagatttcagcacaaggagtgccaaaaccgtagttgaaagagacaattaca 23809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 50642392 - 50642457
Alignment:
Q  35 taaaatggattaagttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaa 100  Q
    ||||||| ||||  |||||||||  ||||||||||||||| ||||| |||| ||||||||||||||    
T  50642392 taaaatgaattatattactgaaaacctggagatttcagcataaggagtgccgaaaccccagctgaa 50642457  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 20406459 - 20406403
Alignment:
Q  49 ttactgaaaggctggagatttcagcacaaggattgccaaaaccccagctgaaagagt 105  Q
    |||||||| | ||| ||||||||||||||||| ||||||||  ||||||| ||||||    
T  20406459 ttactgaacgcctgaagatttcagcacaaggagtgccaaaaatccagctggaagagt 20406403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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