View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21134_low_8 (Length: 481)
Name: NF21134_low_8
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_low_8 |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 7 - 465
Target Start/End: Complemental strand, 5979820 - 5979360
Alignment:
| Q |
7 |
tcgaagaaaatgtctattgtggtttaagtttaaacaattttcgaatactatatgttaaaggtaaattactaatcaagatgatccctatgtgcataaagaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5979820 |
tcgaagaaaatgtctattgtggtttaagtttaaacaattttcgaatactatatgttaaaggtaaattactaatcaagatgatccctatgtgcataaagaa |
5979721 |
T |
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| Q |
107 |
aaagggaaatgatcaaaattgnnnnnnnnnnnctttt--cattcactctatacacgagttcttttttaaaattgaagggtcaatgagcaatctagtgtag |
204 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5979720 |
aaagggaaatgatcaaaattgttttttttttttttttttcattcactctatacatgagttcatttttaaaattgaagggtcaatgagcaatctagtgtag |
5979621 |
T |
|
| Q |
205 |
cacatataataaattgttggtccttatagtaagtgatagattcagacgagaactcaattaaaatttttaatataaggttgcttgcttataatcaagtacc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5979620 |
cacatataataaattgttggtccttatagtaagtgatagattcagatgagaactcaattaaaatttttaatataaggttgcttgcttataatcaagtacc |
5979521 |
T |
|
| Q |
305 |
ttggatgaggtgatcctttaataggtttctgaccatacttcctccaagaatattcatctgttggaatatcagccatcttcaaacttattgcagctaccct |
404 |
Q |
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| T |
5979520 |
ttggatgaggtgatcctttaataggtttctgaccatacttcctccaagaatattcatctgttggaatatcagccatcttcaaacttattgcagctaccct |
5979421 |
T |
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| Q |
405 |
caccactcttttcaacctcatttttctacattaattaacaacaaattaacataaagtaatt |
465 |
Q |
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| T |
5979420 |
caccactcttttcaacctcatttttctacattaattaacaacaaattaacataaagtaatt |
5979360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 298 - 433
Target Start/End: Original strand, 39255752 - 39255887
Alignment:
| Q |
298 |
aagtaccttggatgaggtgatcctttaataggtttctgaccatacttcctccaagaatattcatctgttggaatatcagccatcttcaaacttattgcag |
397 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||||||||||||||| || ||||||| |
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| T |
39255752 |
aagtaccttggatgaggtgaacctttaataggtttctgaccatattttctccaagaataatcatctggtggaatatcagccatcttcaagctaattgcag |
39255851 |
T |
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| Q |
398 |
ctaccctcaccactcttttcaacctcatttttctac |
433 |
Q |
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|||| || ||||| ||||| |||||||| |||| |
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| T |
39255852 |
gaacccgaacaactctcttcaatctcattttcctac |
39255887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 52695424 - 52695489
Alignment:
| Q |
312 |
aggtgatcctttaataggtttctgaccatacttcctccaagaatattcatctgttggaatatcagc |
377 |
Q |
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| T |
52695424 |
aggtgaacctttaataggtttttgaccgtatttcctccacgaaaattcgtctgatggtatatcagc |
52695489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 377
Target Start/End: Original strand, 15173 - 15248
Alignment:
| Q |
302 |
accttggatgaggtgatcctttaataggtttctgaccatacttcctccaagaatattcatctgttggaatatcagc |
377 |
Q |
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| T |
15173 |
accttggatgtggtgttcccttaattggtttggaaccatacttcctccatgaatactcatctgctggtatatcagc |
15248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 377
Target Start/End: Original strand, 50355361 - 50355436
Alignment:
| Q |
302 |
accttggatgaggtgatcctttaataggtttctgaccatacttcctccaagaatattcatctgttggaatatcagc |
377 |
Q |
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| T |
50355361 |
accttggatgtggtgttcccttaatcggtttggaaccatacttcctccatgaatactcatctgctggtatatcagc |
50355436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 352
Target Start/End: Original strand, 12166315 - 12166366
Alignment:
| Q |
301 |
taccttggatgaggtgatcctttaataggtttctgaccatacttcctccaag |
352 |
Q |
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| T |
12166315 |
taccttggataaggtgaacctttaataggcttctgaccatattttctccaag |
12166366 |
T |
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