View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21134_low_9 (Length: 459)
Name: NF21134_low_9
Description: NF21134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21134_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 452
Target Start/End: Original strand, 56286026 - 56286461
Alignment:
| Q |
16 |
gaatttaacttcaatttttgtattctttactcaatttaggtttcagctttaaaggaggatggttgccccaaagtctgggtcgtcacttctgatcacttgc |
115 |
Q |
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| T |
56286026 |
gaatttaacttaaatttt-gtattcttttctcaatttaggtttcagctttaaaggaggatggttgccccaaagtctgggtcgtcacttctgatcactgtc |
56286124 |
T |
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| Q |
116 |
aacaacaagcagcacatggagcagtaagcacattttcataaattgaaaacttgagtaacattgaagcaacttgattgtcaattttcttcataattctttt |
215 |
Q |
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| T |
56286125 |
aacaacaagcagcacatggagcagtaagcacattctcataaattgaaaacttgagtaacattgaagccacttgattgtcaattttcttcataattcgttt |
56286224 |
T |
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| Q |
216 |
ccaattataactattgttctctccttgttaatctgtgcaaactaaggaaataaaagttttctatgatgttaacacaatttccttttcaaatgctggtgca |
315 |
Q |
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| T |
56286225 |
ccaattataactattgttctctccttgttaatctgtgcaaactaaggaaatcaaagttttctatgatgttaacacgatttccttttcaaatgctggtgca |
56286324 |
T |
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| Q |
316 |
ttccattgctcagttatcaagtatctgtaattgagatttatactctggatgttttcagggcgcctttgtttggagtagcaagacattggtggccgaggta |
415 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| |
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| T |
56286325 |
ttccattgctcggttatcaagtatctgtaattgagatttatactctggatgttttcagggggcctttgtttggagtagcaaggcattggtgaccgaggta |
56286424 |
T |
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| Q |
416 |
aaacattaatatgatgtttctgaatgttttcttctca |
452 |
Q |
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| T |
56286425 |
aaacattaatatgatgtttctgaatgttttcttctca |
56286461 |
T |
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