View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21135_high_11 (Length: 308)

Name: NF21135_high_11
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21135_high_11
NF21135_high_11
[»] chr7 (1 HSPs)
chr7 (19-308)||(40383268-40383557)


Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 40383268 - 40383557
Alignment:
Q  19 gtcaagacggtaaaagatggtggccaagattcctccggtaaccagaactgcaccgagacggattccgaataattccggcatccgtcttgagtttagtaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383268 gtcaagacggtaaaagatggtggccaagattcctccggtaaccagaactgcaccgagacggattccgaataattccggcatccgtcttgagtttagtaga 40383367  T
Q  119 gaccgttttccaataactgccatttcaatccaaaacggatttgcaaaagtggcaactgaggacgcaattgagttaccgtttccattaccaccattagttc 218  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  40383368 gaccgttttccaataaccgccatttcaatccaaaacggatttgcaaaagtggcaactgaggacgcaattgagttaccgttgccattaccaccgttagttc 40383467  T
Q  219 ctgagactaatttccctcttgagatactggcactgatggcgtcttttaacgacattttaggtccgttaacggcagttacagatgctggtt 308  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383468 ctgagactaatttccctcttgagatactcgcactgatggcgtcttttaacgacattttaggtccgttaacggcagttacagatgctggtt 40383557  T

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