View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21135_high_17 (Length: 275)
Name: NF21135_high_17
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21135_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 1583114 - 1582867
Alignment:
| Q |
18 |
gataaagagtctggttttggttttgtgaggatgaattggccaaacccaaattctaagataaataatgaaatttatatgttcattgttcttttcatattcc |
117 |
Q |
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| T |
1583114 |
gataaagagtctggttttggttttgtgaggatgaattggccaaacccaaattctaagataaattatgaaatttatatgttcattgttcttttcatattcc |
1583015 |
T |
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| Q |
118 |
tttctccataactgcacttcataatttatcctaaacttactctatttatttatttactacactcctcttattaaactagttttgttgtgttttattggaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1583014 |
tttctccataactgcacttcataatttatcctaaacttactctatttatttatttactacactcctcttattaaactagttttgttgtgttttattggaa |
1582915 |
T |
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| Q |
218 |
aatagagaaagaaacaaatttacctaatgctacggaggaggacctttg |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1582914 |
aatagagaaagaaacaaatttacctaatgctacggaggaggacctttg |
1582867 |
T |
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