View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21135_high_2 (Length: 703)

Name: NF21135_high_2
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21135_high_2
NF21135_high_2
[»] chr2 (1 HSPs)
chr2 (19-688)||(37633029-37633665)


Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 19 - 688
Target Start/End: Original strand, 37633029 - 37633665
Alignment:
Q  19 gctatcacgtatatgcaacttaattattaaagaacatagctagatttgccaattacatgcgaacaagggacaagattgggtgggagaaggtaaagaaatc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37633029 gctatcacgtatatgcaacttaattattaaagaacatagctagatttgccaattacatacgaacaagggacaagattgggtgggagaaggtaaagaaatc 37633128  T
Q  119 agagcaccacatcacacaacgtgattgaagaaggatccaagaagacgtaagaatcacgtgcatgaagttataatatgctaccttttaacattattttatt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  37633129 agagcaccacatcacacaacgtgattgaagaaggatccaagaagacgtaagaatcacgtgcatgaagttatattacgctaccttttaacattattttatt 37633228  T
Q  219 ggtaaatgtttgatatacattcatatgtgtatacactttaaagaaaaatagataaaagaaaatattagaggttaataacgtgataatttgttgtatttta 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37633229 ggtaaatgtttgatatacattcatatgtgtatacactttaaagaaaaatagataaaagaaaatattataggttaataacgtgataatttgttgtatttta 37633328  T
Q  319 tttcatgcattattatcatcattatagttagtttgttactaagttttatgatttcctatcctatacatgaagtaggcttcttcta---tgttgtcaaatg 415  Q
    |||||||||||         ||||||||||||||||||||| |||||||||||     |||||||||||||||||||||||||||   ||||||||||||    
T  37633329 tttcatgcatt---------attatagttagtttgttactatgttttatgatt-----tcctatacatgaagtaggcttcttctatgttgttgtcaaatg 37633414  T
Q  416 acatatttcacgtgccctttctgcaacatattcagcattgtatataatagtgccactagtagtttatcttggctcacccgtcagtgaacatttatatacc 515  Q
    ||| |||||||||||||||||||||||||||||||||| ||     |||||||||||||||| | ||||||||||||  |||||||||||||            
T  37633415 acacatttcacgtgccctttctgcaacatattcagcatggt-----atagtgccactagtag-taatcttggctcactagtcagtgaacatt-------- 37633500  T
Q  516 accacatctctttggctagctagctatgacgttttcaaccacagcctgagacagagtttcttagattttgaggctatggcatggagacgtcacccgatca 615  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37633501 --------tctttggctagctagctatgacgttttcaaccacagcctgagacagagtttcttagattttgaggctatggcatggagacgtcacccgatca 37633592  T
Q  616 tagcacatgttaattttatcattttcaaatcaatttcaattgtttctgtatcttatatatggatatctctgtg 688  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37633593 tagcacatgttaattttatcattttcaattcaatttcaattgtttctgtatcttatatatggatatctctgtg 37633665  T

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