View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21135_high_25 (Length: 228)
Name: NF21135_high_25
Description: NF21135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21135_high_25 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 1241408 - 1241503
Alignment:
| Q |
101 |
cttaaaagagtttagaagtttgacaaataaataacctgagctaatttagtatgtattcctaaaacttcactccataattcatatagatgatctttc |
196 |
Q |
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| T |
1241408 |
cttaaaagagtttagaagtttgacaaataaataacctgagctaatttagtatgtattcctaaaacttcactccataattaatatagatgatctttc |
1241503 |
T |
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Target: scaffold0200 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 341 - 436
Alignment:
| Q |
101 |
cttaaaagagtttagaagtttgacaaataaataacctgagctaatttagtatgtattcctaaaacttcactccataattcatatagatgatctttc |
196 |
Q |
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| T |
341 |
cttataagagtttagaagtttgacaaataaacaacctgagctaatttagtatgtattcctaaaacttcactccataattaatatagatgatctttc |
436 |
T |
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Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 41973033 - 41973128
Alignment:
| Q |
101 |
cttaaaagagtttagaagtttgacaaataaataacctgagctaatttagtatgtattcctaaaacttcactccataattcatatagatgatctttc |
196 |
Q |
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| T |
41973033 |
cttataagagtttagaagtttgacaaataaacaacctgagctaatttagtatgtattcctaaaacttcactccataattaatatagatgatctttc |
41973128 |
T |
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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 12170266 - 12170321
Alignment:
| Q |
1 |
ttttcctactgtcgtattataatttcgttaaaatcttttcttactatatagcaatgctc |
59 |
Q |
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| T |
12170266 |
ttttcctactgtcgtat---aatttcgttaaaatcttttcttactatatagcaatgctc |
12170321 |
T |
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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 45473298 - 45473339
Alignment:
| Q |
18 |
tataatttcgttaaaatcttttcttactatatagcaatgctc |
59 |
Q |
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| T |
45473298 |
tataatttcgttaaaatcttttcttactatatagcaatgctc |
45473339 |
T |
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